RNA id: XM_021597700.2


Basic Information

Item Value
RNA id XM_021597700.2
length 2980
RNA type mRNA
GC content 0.46
exon number 3
gene id gjb8
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65326162 ~ 65330529 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGAACATTAACACGAGTCCCTTGCTGTATTGGAAACATAAGGACATTTCATAtcgtaaataataatacaacaaaGTTACATTGATACACACCTTttaatagggttagggttcccacacggacatatttccatgttacagcgcttgtttacgGGAGACGCTGGACTGTGCTAATAGCTATATGCgtctctgaacacctgtgtgtaaatgGAAGACCGACGCCACACACGTCACTGAAACGTGCTGCAACTATGCTAAACCCGGTTAACACAGTGTACACTAACAGGTAGATTGTCCTCGAGTGAAGATCGTAAAAACTCAGGTACATCTCATCAGAGCGCAGACTTCACAGTCGGACCTACTTCCAAACAACTAAATATTCCCCTCGGCTTCGTTTGGAGTTGCTCTCTCCGTCTTTGGTGATTCTTTGAACGACGGCATTAAAGTGCACCGAAAAGTAAAATTAATGGACGTTTGCTGAAATTCCGAGGAGGTGGTCTAAGCCAAAGCTGCTGTAGAGATGAGTTGGGGGGCTCTGTATGCCCAGCTGGGCGGGGTGAACAAACACTCCACCAGCCTGGGGAAGATCTGGCTGTCTGTCCTATTCATCTTCCGTATCACCATCCTGGTACTGGCTGCAGAGAGCGTGTGGGGAGACGAGCAGTCTGACTTCACCTGCAACACCCAGCAGCCCGGCTGTAAGAACGTCTGCTACGACCACTTCTTCCCTGTGTCACACATCCGTCTCTGGTGCCTGCAGCTGATCTTCGTGTCCACACCGGCCCTGCTGGTGGCCATGCACGTGACTTACAGGAAGCGTGGGGACAAGAAGCACATCATTGCGACGGCCTTGCACAGTGGTGGTGATGACAAGACCAGGCAGGTGGACCTAGAGGCCCTGAAGAGTCGTCGTCTGCCCATCACGGGGCCTCTGTGGTGGACGTACACCTGCAGCCTGTTCTTCCGCCTGATTTTTGAGGCTGGCTTTATGTACGCCCTCTACTTTGTTTACGATGGCTTTGCGATGCCTCGTCTGGTGAAGTGTGAGCAGTGGCCCTGCCCAAACAAGGTGGACTGCTTCATCTCACGACCCACGGAGAAGACCATCTTCACCATCTTCATGGTGGCTTCGTCTGCCATCTGCATGGTTCTCAACGTGACCGAGCTGGCCTACCTCATCGTCAAGGCCCTGATGAGGTGCTCCACCAGGATGTCCAAGAAGAGCCGTGCCTACGCTCACCCCGATCACATAACCACGAACAAGTCCCTACTACAGAATAAAAAGAACGAGATGCTGCTGTCCTCTCTTACAGATTCCTCCAGCACCAAGACCGTGTGAGCCCAGCATAGTGTCCATGTTCTTCCCCATTTAGACTACAGAGAACTAGGGAGTAGAAAcctatcagtgttttgttaccATGAGAAGAGAACATGTGAGGACATACCTGTAGCAGCTGAGAGGACTGGCCTAACCCTGAGTCTGCTTTTCTAGAGCAGATTCCCaattccagtcctccagtacccccaacagcagatgtttttgttgtagccctggatGAACATGCCTGATTCAACTCACTGAGCGATTGCTAATTAGTTGACAAGTTTAATCAGATGTGCTTGTCCAATGTGTAttgttgggggtactcgaggactggCGTTGGGGAACACTGTCGTAGAGGATATATATATTTCTGTGCCTTCCACTATGACTGATCTATGGGGTAATGttttagcattttttttttatgtattttttttattttatttatcttggTGCTTGTGTGTTTGAGCTACATGTGTGTTTGGGAGGTTGAACAGCAGTGACAAATGGGTCTAGATCGCCACCTTCTGGTTTACAATGAGCTTGCAGGAGTTTGTTTTATTGTGGAGCGCAACCAGAATTGGTTTATGTTACTACTTCAGCTTTGTGGGACACTTTACCAAAGCAGAAACTCACAAGTGTGCAGTATAGCTCCAAGTTCTATTTGAGGCTCATACCGGCGAAGGAAATGTATTGAGTACCAAAGCAATTTTAAAACAGTGCCTTCGTCTATTAGCGGTGTCAAACAGTATGATGTAGATGCTGTATATTGAGCATTTACAtttaagtaatttagcagatgctcttatccggAGAAACGTACAGTAGTGAATGCATACCTTTTCACATTTGTTCGTACCGGTCCCCCATAAGCCTGACGTTGTGAgtgccacgctctaccaactgagccacaccgAGCACAATGTTTTTAGGTAGCATGGCTGATACACTTGAACATTATGGACAGATTTCCTGGACCCAAATGAAGCCTATTCCTGTACttaaaaagcatgctcaatgggGAATATCCATGCTTCTTGGTCCAGGAGTAGGCTTAAGCTGGGTACTGGAAACGGAACCTCTGAGCATTATGCCAACTGAGTCCGACATATAGCCTATTGTTGTCAAGACTGATTGTAAACGTGGCTACAGAGCCTAACAGCTTGTTCCTTATTTTAGGCACTGAACATATCACTGCACCTCTTTCAATGTGAGTTAGCGGGCTGATCTACAGGCAAAACTGGCCTAATGTGCTTTGTTCAAAAATGCATGTAGAAGTTGGACCATAACTTGTATCACTGTAGTGACAATTTGACTGTTACCTGTGAAAAGGTAAGGACAGTTTTAGTAATGAGATGCATCACACACATATGTGAAAGCACTTTGTGGGCTTACTTCCTCTCACAATCTTTACAGTTGTATGGGGgctttttgtatgtttttttacATTGACTGTTTGGAGAAAATGCTAAATTCAGTAGTACAAATCGTTCGGGAACATTTTTGAAAGCCTCAACATTGCCACTTGCTTCTTTACAGCAGCTAGAGCCTAGCTATTAATGTACAGATTTCTAACCTGCATGTTTTTGATGTTTGTATTTTTTAGATCTGCACTCTGACCCTGAGTCTTGACTTttaattaaaaaacaaatgata

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07621 GJB2, CX26; gap junction beta-2 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325367 lncRNA downstream 21664 65290732 ~ 65304498 (-) True G286979
TU325375 lncRNA downstream 25238 65300694 ~ 65300924 (-) True G286986
TU325342 lncRNA downstream 73374 65251989 ~ 65252788 (-) True G286961
TU325341 lncRNA downstream 74313 65251643 ~ 65251849 (-) True G286960
TU325340 lncRNA downstream 75664 65250231 ~ 65250498 (-) True G286959
TU325401 lncRNA upstream 7644 65338173 ~ 65339895 (-) True G287005
TU325442 lncRNA upstream 115550 65446079 ~ 65446302 (-) True G287041
TU325444 lncRNA upstream 117539 65448068 ~ 65448417 (-) True G287043
TU325474 lncRNA upstream 196419 65526948 ~ 65532451 (-) True G287067
TU325492 lncRNA upstream 224001 65554530 ~ 65554731 (-) True G287081
XM_021597696.2 mRNA downstream 148 65320894 ~ 65326014 (-) True LOC110520402
XM_036965070.1 mRNA downstream 143508 65173958 ~ 65182654 (-) False LOC110520397
XM_021597684.2 mRNA downstream 175991 65146520 ~ 65150171 (-) True c3h2orf76
XM_021597681.2 mRNA downstream 217363 65106729 ~ 65108799 (-) True c1ql2
XM_021597676.2 mRNA downstream 334009 64987753 ~ 64992153 (-) False en1a
XM_036974947.1 mRNA upstream 303 65330832 ~ 65357384 (-) False cryl1
XM_021597697.2 mRNA upstream 303 65330832 ~ 65362594 (-) False cryl1
XM_021597698.2 mRNA upstream 303 65330832 ~ 65362601 (-) True cryl1
XM_021597701.2 mRNA upstream 56994 65387523 ~ 65390329 (-) False eef1akmt1
XM_021597703.2 mRNA upstream 56994 65387523 ~ 65390331 (-) False eef1akmt1
TU325373 other downstream 25745 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 90254 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 250177 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 270951 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 296426 65014259 ~ 65029736 (-) True G286580
TU325443 other upstream 116296 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 249262 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1512142 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2296303 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2553223 67883752 ~ 67886232 (-) True G289653

Expression Profile