RNA id: XM_021597703.2


Basic Information

Item Value
RNA id XM_021597703.2
length 2293
RNA type mRNA
GC content 0.47
exon number 5
gene id eef1akmt1
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65387523 ~ 65390331 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACGTCTCTGGAGCAGCTGATCCGGAGGAACGTGTATTAATCCTACTGTAGGATTATATTATACCTCGGTGTGTGACACATTGCAGCTAGCACTATCAGGTCAAACGAACGATTACAATGAACGAGTTACTCCGAAAATTGAATCACGAATCTCGAGTCAGTAAAAAGAACGAATCGTTCGCTAACGGCATATCAATAGTGCGCAGCCTGACAAAATCGCGCATGTAGAATACCATATGTCCTTCCTCGGACACCGTAACTGCAGTGTATGTTATTATTTCTTGACACGTGTTGTAAGCGATTAATCAGTAGCGACAGTTAATATTTATTTTCAGAAACCAGCAACACACCACGCAAAGTTTGTGTTACGTGTAGGTAGGTGGTTGTCATCGACCTTCCAGCAAGTTTGAAGCCATGAGTGACAGCGACGACGATATCCCTCAGCTGTCCGCGGCCACCCTTGCTGCCCTGCAGGAGTTTTAcagcgaggagagagacgggCTTGTGCAGAGCACAGCACCGGTGGACAAGTACTCGGTGGGGGCGGTGGAAGAGGACTGGCGTATGAGCCAATTCTGGTACAGCGACGAGACAGCAACACGGCTAGTTGAAGAGGTTATTCAGGAAGCTGGGAAAGGTGGCAGGATAGCCTGTCTGAGCGCACCCAGTGTGTACCAGAAGCTGAAGCAGGGGGTGGTGGAGGGCTCTGACGGTGTGTCGGCTGTGGTTCTAGAGTATGACCGCCGTTTTGCCACCTACGGCCAAGAGTTCATCTTCTATGACTACAACGAGCCCCTTGCTCTCCCAGAGGATGTGGCCCCACAGAGTTTCGACGTTGTCCTAGCTGACCCCCCCTACCTGTCTGAGGAGTGCCTCAATAAGGTCGCCCAGACTGTGAAGTACTTGGCCAAGGGCAAGGTGCTGCTCTGCACAGGAGCCATCATGGAGGAGCATGCAGAGAAGTTGATGGGTCTGAAGATATGCAGCTTCCTGCCCAAACACAACAAAAACCTGGCCAACGAGTTCCGCTGTTTCACTAACTACCCCTCAAACCTCATGTCCTGAGGCTCTACAACCCTTCATGTATGGCCTTATTGACTTTTGATGTCTGACGTCCATCAATGCCTCAGTTCTGACTTGACCAATGTCTGTGATAGTCGCAAAGAAGGCCCATCTTGTTGGGCAATTTCCGTTGCCTTTCCTTTTAGACAAGGTTTCATTTTGGGGACTAATGGTATCAGACTCTGGAGATTGTTTTTAAAATGATTTCTTATCCCATAACATAATTATGAAGTGAATAATGGTATTCATATGACTTCAGTGTAAATAATATTTCATATACACAGCAAAAATAAATCTGTCAATATTTCATTTGCAGGGCCTGGGAACATGCTTAGAGTATCATGTAATACCAGCAGTCGGCAGTGTCAATTAAGTATATTACTGTGTTGAAATCCTCCTGGGTTCAAAACTACTGCTGCTTACACAGCCAACCATGCATTTTCATACATATCACACAGCCCTTCTCTATTGCCTTGCTGCCCGTGGATAGTTTGTTCTTGTCATTGGAGCGGAGACTGCTCTCTTCAAACTCAAGGATGCGCAGAGCAGAAACCAGTCTTTCTCCAGCAGAGGAACATGGGTGGACCCCATGGCCACAGATACATAGCTCTATGCATGAGTAGTAGGTTTATGACAATTCATCCACCTGCGCTCAGGCAAACCCCTCTTCTGTTTCAAGTGAAGATCTGTGTTATAATGCATCTGTAAAGGAATTCACGCTGCTTGCTTAGCAAGCACCACTTCCCGATTTGAACCATATCTGGCACAAACtcaggacctctgccttgctagcacacCTGACCACCCTCCTGAAACAGCTTAACTGTTGGTGCCACATGAAAATCTAGCTATTTGCTGGTGCAAGTGGGGACAACTCGGGCTGAGAAGTAAGTTtcacatccccatgtgctacatTGATCCCTCAAACTCACTCAACAGCAACCCCAGCGTGAGCTGAGTGCAACTGTAGATCCGAGTCACGACACCACTGTAAAGGACCTCAAGCTGCTTTGTTGAGGACAGGGCGTCCCACTGACTGGCAGGTGACATTCTGCCACTCTTAGGGTGCAAGCTGCAGAGTGATGCTTGCTAAGCAGTACCACTTcccatagccgcgggaagtagtttgggggtgctgcgatttattattattttttgcccaATTTGTTTTCTTGATGGTACTGAAGACAatactgtatactgaacaaaactataaacgcaaaatttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325401 lncRNA downstream 47628 65338173 ~ 65339895 (-) True G287005
TU325367 lncRNA downstream 83025 65290732 ~ 65304498 (-) True G286979
TU325375 lncRNA downstream 86599 65300694 ~ 65300924 (-) True G286986
TU325342 lncRNA downstream 134735 65251989 ~ 65252788 (-) True G286961
TU325341 lncRNA downstream 135674 65251643 ~ 65251849 (-) True G286960
TU325442 lncRNA upstream 55748 65446079 ~ 65446302 (-) True G287041
TU325444 lncRNA upstream 57737 65448068 ~ 65448417 (-) True G287043
TU325474 lncRNA upstream 136617 65526948 ~ 65532451 (-) True G287067
TU325492 lncRNA upstream 164199 65554530 ~ 65554731 (-) True G287081
TU325494 lncRNA upstream 166096 65556427 ~ 65556658 (-) True G287083
XM_021597698.2 mRNA downstream 24922 65330832 ~ 65362601 (-) True cryl1
XM_021597697.2 mRNA downstream 24929 65330832 ~ 65362594 (-) False cryl1
XM_036974947.1 mRNA downstream 30139 65330832 ~ 65357384 (-) False cryl1
XM_021597700.2 mRNA downstream 56994 65326162 ~ 65330529 (-) True gjb8
XM_021597699.2 mRNA downstream 57623 65326162 ~ 65329900 (-) False gjb8
XM_036974949.1 mRNA upstream 2518 65392849 ~ 65432153 (-) False xpo4
XM_036974950.1 mRNA upstream 3171 65393502 ~ 65432145 (-) True xpo4
XM_021597705.2 mRNA upstream 47232 65437563 ~ 65459000 (-) False LOC110520406
XM_021597706.2 mRNA upstream 47232 65437563 ~ 65459000 (-) False LOC110520406
XR_005051354.1 mRNA upstream 67708 65458039 ~ 65458985 (-) True LOC110520406
TU325373 other downstream 87106 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 151615 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 311538 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 332312 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 357787 65014259 ~ 65029736 (-) True G286580
TU325443 other upstream 56494 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 189460 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1452340 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2236501 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2493421 67883752 ~ 67886232 (-) True G289653

Expression Profile