RNA id: XR_005051354.1


Basic Information

Item Value
RNA id XR_005051354.1
length 814
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC110520406
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65437563 ~ 65459000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTGCATTGGTCCCTCACGTGACTCCAGGAATGTTAACAATGCAGTAAGTGTCCAACTTTGTACTGCATTCTAATTCTGCCTGTAGTTGGGGGAAAATGGAGTCTCTTCTCAGGATATTTACCCGGGCCTACCGTTGAGAAAGTTCGATACATCATCGTATTGATTGTGCAACAAAGGATTGGATATAAAGTTTTCCCGAAAAGCGTATTTGGTTGGATTCTTTCTCGGATTAAAGCCGAATGATACTTCTATCACATGCTTTTGGCCAGAGGAAGAGACTGCTGGGACTGAAATTCTCCCTACATTGGAATGTCGGGCTGCTCCAGGCTGCAGAGTTGCGCTCTGATCCACCGATAGATCATACAACTTCCAGCGCAAAGTTGAGAAGGCCCCACAATATTTTTCAGTCTCGAAATGTTCTAATTAATCACAACCTCGACAAGAAAACCCATAACGTGATCAATATGTTTAGGATATTGAAACAAATGTCATTTTACAATGGTTTTGTTTTCACTAAAGCCTAGGATGGGAGGGGGTCTTAAGCGTggcaaaataatatttaaatgaCGTGTTAAAAGTGTTATAATGTACCTTTGAAACACGAATGTgtctttaaaatgtttatttgagATGAATATGGATTCTTAGGATGTTTCTGGTTGCATTAAATGTTTGGTGAATTATTTAATTCCATAATGGTCTCTCATTCTGTAAACGGGCTGCAAATAGTCAActgtctttttgtgggatgtgcACCATTGTTCTTAATGTCCAGATTTTTTTATGATGCTGTTTGATAAACTTTTGAATAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325444 lncRNA downstream 9622 65448068 ~ 65448417 (-) True G287043
TU325442 lncRNA downstream 11737 65446079 ~ 65446302 (-) True G287041
TU325401 lncRNA downstream 118144 65338173 ~ 65339895 (-) True G287005
TU325367 lncRNA downstream 153541 65290732 ~ 65304498 (-) True G286979
TU325375 lncRNA downstream 157115 65300694 ~ 65300924 (-) True G286986
TU325474 lncRNA upstream 67963 65526948 ~ 65532451 (-) True G287067
TU325492 lncRNA upstream 95545 65554530 ~ 65554731 (-) True G287081
TU325494 lncRNA upstream 97442 65556427 ~ 65556658 (-) True G287083
TU325508 lncRNA upstream 109035 65568020 ~ 65568248 (-) True G287097
TU325521 lncRNA upstream 120287 65579272 ~ 65579563 (-) True G287110
XM_036974949.1 mRNA downstream 25886 65392849 ~ 65432153 (-) False xpo4
XM_036974950.1 mRNA downstream 25894 65393502 ~ 65432145 (-) True xpo4
XM_021597703.2 mRNA downstream 67708 65387523 ~ 65390331 (-) False eef1akmt1
XM_036974948.1 mRNA downstream 67708 65387523 ~ 65390331 (-) True eef1akmt1
XM_021597701.2 mRNA downstream 67710 65387523 ~ 65390329 (-) False eef1akmt1
XM_036974951.1 mRNA upstream 13300 65472285 ~ 65475542 (-) False ska3
XM_021597708.2 mRNA upstream 13300 65472285 ~ 65476510 (-) True ska3
XM_021597709.2 mRNA upstream 21155 65480140 ~ 65484785 (-) True hcn5
XR_005039939.1 mRNA upstream 26899 65485884 ~ 65486801 (-) True LOC118944602
XR_002472975.2 mRNA upstream 45000 65503985 ~ 65508384 (-) False pla1a
TU325443 other downstream 10756 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 157622 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 222131 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 382054 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 402828 65054700 ~ 65055211 (-) False G286638
TU325523 other upstream 120806 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1383686 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2167847 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2424767 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2747605 68206590 ~ 68208395 (-) True si:ch211-214p13.7

Expression Profile