RNA id: XM_021597708.2


Basic Information

Item Value
RNA id XM_021597708.2
length 2419
RNA type mRNA
GC content 0.51
exon number 10
gene id ska3
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65472285 ~ 65476510 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTTCGGTCTTGAGAGTCCTGAATAAACCTACTTCCGTTAGGTTCCGGATGTGGCGCCAAATTTGAAAAATATTCCTGTTTCAATTTATATGAACGTAAACAGACAGCGAAAATTGACGTTGAAGATAATACTACTTTTAGAAACATATCTGCAAACAAATGGACTCGTCGGCACGTTTTTTCACTAAGTTGCGAAACCTAGCCGTGAATTTGGAGACCGAAACTGCCAGTCTTCAACAGGCACACCAGAACTACGACGATGAAGATCATAGCACTGAGAGTGCAGTGGGAGTTCTGCAAGAGCTGCACTCCGAGGTCAGGGGACTCAAGGGCCAGGTGAAGGAGCAGCTGGTGCGCCAGCAGGCAGGGGAGAATGATTTGAGGAGCTTTATAAAGATGTGTATGGTGCTGAAGCAGAGGACCACAGAGGACATCCAGAGACTGATGAGACACTATGAAAAATATGGCTACAGAGCGCCTAAGAGCACACAGAAACAGTCAGAGTCGAGCGGCCAGGAGGCAGAAGCTTCAGAGAAAGAGGACGAGGGTGAGaccgagggaggagaggaggaccaggagaaaggagagggatacCTCACCTCAGTGACCCCTCTGAAGATGCCCCCTCCGCCCTTCATTGACCCCTTGCGCACCCCCCAGCTCTCTGACTTCGGCCTGTCGGAGATCCACCTGAAGAGGGTGTTGGGTGGCACAGTGTTTTCCAGCGCTGAGGCCCCCATGCCCATGATGACCCTCCCTCTGCCGTCTCTAGTCCTAGCCATGCAGCCACCCATGCCCAAAACGCCCAAGTGCACCTTGCGTATGGACGAAGATGACGACCTCCTGACCCCCCGCATGGTCGACTTTGGCCTCACGGAACACACTGTGTGTCTCAACAATGACTTCACCATGGACCTGCAGCGCAAGAAGCCCACAAAGCCTCTCAGCTCAGCAGTGTCCTTGGGCTTGGGAGTAATGTCACAGAGACCGGCACATGTCCTCTCCACTCCACCATCAAACTCCATGATGTACAGCCTGGCTACCATGGAGTCCCCCGAGCCGCCTGTATTTTGCACCCCAGGTCTGAAGATAACAAAGTCTCAGCGACACGCTCTGTCCCCTCCTCTGCAGGGAGAGATTGACCCAGAGTCCCCCTGTCGCCTTGGCAACCACCAAGCCACCCCTGAGGTCCCAGCATTTGAGACACCATACATCAACAGACTCCTTAGCACCAGAAAGGGTGAGAGAAACACACAGGCAGATGAAGACCAAGATCACTCAGAACTTCCAACCTCCAATAGAGGCTCCAGTCAAGCCTGGTCATATAATGTGTCAGAGATATCAATCATTGGATGTACAGAGGAAAAACTTACACCAGAGATGCCAAGCCTAGAGTCTTTTCTGGGCAGCTCTCTACCCTATAGGGGTGGCGGTGGAACCAGTGGAGAGCAGACTATGGGGTCAGGAgagccccctctctctttcctggaTCAGGATGGTCCCACCCAGACATTCAACCTGGGGACCCCACGGGTCAGAGGGGACTACCCCGAGCCATCCACCCCTGAGATGCCGGACCTAAGCTCTGTCACACAGGACATCTTTAAGCTTATTTCCCAGAGCAAGAAGCTCCCCACAGCAGTAGTTCAGCCACACCTCAAGCTTTCAACCCTCCACACTGCAACAGGGAAAGAGAACAGGGCTCAGAGTCTGGCTGTGGTGTCCGAGAGGGAGTTCCTCAGTCTTCCAAGCTATCTGAGACAGATTCCACTGTCCAGCCTCAACCAGGCCATTCAGAAGATCAACGGTGCCAAAGAGGAGCGAGGCCACAGTGGTGATGCGGGCCCTGCATGGTTTCTGATGGAGGAGCTGAAGAGGATCACTGGGGTGGGCACCAAGGCCCCCATGTACTTCCTGTGTCTGACTGAGTTAAAGAGGCTGGAGCATGTGCAGGGAGTAGGAACCAGCGCCATGTACAAGGTCCTGTCAAAGACACGTACCTGATCTGAAGTACAATGACATTCCCTGCCTTCTTAAACCTCCCAAAGGGCTCAACACTACTGAGTGAGGTCCTATGTATTGACTCCCCTCCTGAATaggcctgggtgccagtctgtttagctatcaTTCACTCCTTGCCACTGCTGTCATGCTAAACATTGGCATATGACAGAGTACAAGGAGTGAAATGTTAGCGAAACAGCCCGGCAATCAGGCTAGAATAGGCCCAAAATtgattcattattttattttcaccTTTGAGAACTGTACATATGTTTTGTCTTGGTCTTTTTAATTGTGTAGGTCCTTCTGTTCAAAATGCATGAATACTCAGTCGATTTAGCATTTTCGTAGTTTTCTATGTGTATAATTGGTCTGTGTGTAATCTCACTAATAAATACATAATTATGAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325444 lncRNA downstream 23868 65448068 ~ 65448417 (-) True G287043
TU325442 lncRNA downstream 25983 65446079 ~ 65446302 (-) True G287041
TU325401 lncRNA downstream 132390 65338173 ~ 65339895 (-) True G287005
TU325367 lncRNA downstream 167787 65290732 ~ 65304498 (-) True G286979
TU325474 lncRNA upstream 50438 65526948 ~ 65532451 (-) True G287067
TU325492 lncRNA upstream 78020 65554530 ~ 65554731 (-) True G287081
TU325494 lncRNA upstream 79917 65556427 ~ 65556658 (-) True G287083
TU325508 lncRNA upstream 91510 65568020 ~ 65568248 (-) True G287097
TU325521 lncRNA upstream 102762 65579272 ~ 65579563 (-) True G287110
XM_021597705.2 mRNA downstream 13285 65437563 ~ 65459000 (-) False LOC110520406
XM_021597706.2 mRNA downstream 13285 65437563 ~ 65459000 (-) False LOC110520406
XR_005051354.1 mRNA downstream 13300 65458039 ~ 65458985 (-) True LOC110520406
XM_036974949.1 mRNA downstream 40132 65392849 ~ 65432153 (-) False xpo4
XM_036974950.1 mRNA downstream 40140 65393502 ~ 65432145 (-) True xpo4
XM_021597709.2 mRNA upstream 3630 65480140 ~ 65484785 (-) True hcn5
XR_005039939.1 mRNA upstream 9374 65485884 ~ 65486801 (-) True LOC118944602
XR_002472975.2 mRNA upstream 27475 65503985 ~ 65508384 (-) False pla1a
XM_021597713.2 mRNA upstream 27478 65503988 ~ 65508384 (-) True pla1a
XM_021597717.2 mRNA upstream 34088 65510598 ~ 65512345 (-) True hsd3b1
TU325443 other downstream 25002 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 171868 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 236377 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 396300 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 417074 65054700 ~ 65055211 (-) False G286638
TU325523 other upstream 103281 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1366161 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2150322 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2407242 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2730080 68206590 ~ 68208395 (-) True si:ch211-214p13.7

Expression Profile