RNA id: XM_021597728.2


Basic Information

Item Value
RNA id XM_021597728.2
length 4663
RNA type mRNA
GC content 0.47
exon number 2
gene id LOC110520418
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65821455 ~ 65840478 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCAATCAAGGGCTTCGCTCAGCGTATTAATATCATCAAATAGGAAGCCTAGCTAGTTAGTTGTTGAAAAAATCCAAGGCTGCCAATGCTGTGGTATTTGAAGCACGATTATTGTTAATTTAAATACACTTAGAAGATGGCTAACAAGGCAGAGTCCACTATGAGCACTAGTGAGAGTGTGTCCCACAGCGTGCTGAGCTGGGACCAGGTGAGCCGTCTTAATGAGGTCCTGACAGAGGTGGTGCCTGTCCATGGCCGAGGGAACTTCCCCACTCTGGAGGTGCGGCTGAAGGACATTGTGCAGATGGTGCGCACCAGGCTGCAGCTAAGGGGGATTAAAGTGAAAGACGTCCGTCTGAATGGCTCTACAGCCAGCCACGTGCTGGTGCAGGACATTGGCTGGAGCTACAAGGACCTGGATGTCATTTTCAGGGTCGACCTGCCCCAGGAGTCAGGGTTCCAGCTGGTCAAAGACGTGGTGCTAGGCACCCTGCTGGACTTCCTCCCTGAGGGGGTGAACAAGGAGAAGATCACCCCCATGACTCTGAAGGAGGCCTATGTTCAGAAGCTAGTCAAGGTGTATACTGAGCAGGACCGCTGGagcctcatctccctctccaacAACAACGGACGCAATGTGGAGCTCAAATTTGTGGACTCTATCCGCCGGCAGTTTGAGTTCAGTGTGGACTCATTCCAGATCGTGTTGGACTCACTGCTCACCTATTATGACTTTTCGCCGGGGAACCCCATGTCTCGCCACTTCCACCCCACCGTGGTGGGCGAGAGCGTGTACGGGGACTTTGGCGCGTCTCTGGATCACCTCATGAACAAGCTGATTGCCACCAAGCGGCCAGAGGAGATCCGGGGTGGGGGCCTGCTCAAGTACTGCAACCTGCTGGTAAGGGACTTCCGGCCCACCTCGGAGGAGGAGTTCAAGGGCCTGGAGCGCTACATGTGCTCCCGCTTCTTCATCGACTTCCCCGACATTGGTGAGCAGCAGCGCAAGCTGGAGGCCTACCTGCAGAGTCACTTTGTGGGCGAGGAGAAGAGCAAGTATGACTACCTCATGATCCTGCGGCGTGTGGTCAACGAGAGCACGGTGTGTCTCATGGGCCACGAGAGGCGGCAGACCCTCAACCTCATCTCACTGACAGCCTTCAGGGTGCTGGCTGAGCAGAACGCCATTCCCGACGCCTCTAGCGTCACTTGCTACTACCAGCCGGCGCCCTACGTCCGAGACCACAACTTTAGCAACTACTACGTGGCCTCTTGTAACCAGAACATTCCAACATGGCTGCCATGTAACTGaaagacacacgcacacaagaGAAGACGGCTGctttgaggggggaaaaaaaaaaaaaaaagagataaaTAGGCTCCCCATAAACACAAATTGGGCCATAACTGGGATTTCCCTCTGGTCATAAAGGATCTATTTAAATGGACAAgtggttttgtttgtttttttgactCCCTTCTCCTTTCTCATTACTTATCTGCAGAGGCGTCAAGATAAATTGATCCAAAGTGATATTTAAGTGTTTGGATTCATGTTATTTAGCCTTTTTTTCGTATTGCAATGTTTTTgttcccctttttttttttttctctccctaaTCTGAGTTTCGAATTAAGTTCTGATTCAATAATGAATTGTCTTTGGTGCCTTACTGTCTGTCTTCCCCTGATAAGTATATTTGGTCCATCTTaatagaaagggggggggggggggggggggattgtgtgTTTGGGTTGTGTATTTAAGAAATTTGAAAAGACTGGGGGTGCAGAATGTTAATTGTGTAGTGACTAAAAACGAGcataaaaaaaatgtgaaatgaTTCCTGAGCTGGCATGGGTGTTTAGCTTCCTGATGCGCAGTAGTGGTTTGCTCATCAGTGTGGGGATTTTCTATTAGTGAGATGACTTCATCTTCATTTCCTTTAGAAGGCATCCAAGGTAAAAGGGAGGCCAAGGAACTGCTCATTTAGTTTTAAATCAAAGGTGTAAATTGGGAAAGTCATATTACTAGCACAGCAGTGTTCTCTAGCGGCCAGAGTGCCTGTGCCGTGTAGACTTTGTAATTGTATTTTCCACTGTGAATGTTGGTGACAGCCTCCTAAATCTGTTCAGccctttcttttttcttttcttttttttaaagaactttATTCAGTCAAGACTGGATTTGAGTGTATACTATGTAGGGTGtaaagtggcttcctctccttgtgtcctctcctccatgcAACAGGTCAAATAGAACTGTAGAAAGCCTATCCAAACCTTTTGCCTGTTTGTGTTAATGCTTGAAAGGAGACTAGGGGAGGATGCCATGAATGAGTATTGACAAGCACCCCCATACAGTGACTGTTGGGCCTTTATTTGCCCACTGATCTGGGCTAATGTATGTTGTGTGGagttaatattttattttaaacttCCAAATTGTCAGTGTTCATGGTCCACCTGGTgggttctatactgtaggctcATTCAGAGGGCAGGACAGGGCCTTCCTCTCTTCCTGGAATCTAATCTGAGAGGCATGGAACTACTGTCCCGTTCCTTGAAAGGAGCCCCACTTGGCAGGGTCTGGAGCCCCTTGCGGGCTTCGCAATGGCTGAAATGGGATCCCAGTCTGGTGCAGGCTACCCAATAGCTTTAACAGCAGTTTATAATTATTGTGGGAGGGTAAGGAAGAGGGTTGTGTGTCACTGCCCCTTTACATGTGTGAGGGCTTACTCACTTTCCGCTCCACTCTCCACCACCCTTTAAGGGTTTGCTGGGGGCAGGTGTGAACCGTTTTCTGGTCATGGGAGGACAGGGGAACATGGCTGCTTGCCTAGCACATTCAACAAAATGTAAATGTCTGGAATTCCGTTCTCAATTTAGACCTCACGCTTTTTGATTTATATGGCAGAAGTTGTACTCCGATCTATGACGGGCATCCCAGTCCCCTTTCAAACTTGAAACCCCATTTAGAAATTGccccctaccatctccctttTGACTGACCTCCATTTTAATTTCCAGTCCAGTAAGCCAACTGTTCTAAGTGTTTCTGTCCAACCAAACCCAGGGAATAACTTCTGCAAACCTAATGTGTGCATCCAGAAAAGGGGTAGGATGTGGTTCTGCCCTGTTCAcaggcatgggggggggggggtggtggtgatTTTTGGGGGGTGGTCAGCCAGCATGGTCTTCTCTAGAGCTGATCATACCCCTGGCTCAGGGCACGTTGAGCTGGCTCAGCAGCCCAAAACGTAGACACTGCTTTTAACCTGGGTTAGCCTTAGCTTAGATTTAGCCACCATGTGGGCACATTCAGTGTGGGGGCACATTCAGTGTAGGCCAAAGCCTGAACCAGCAACTGAAGTGCCTTCAAATTTTGGCAGGATTTGTTTTTGGGAGGTTGGGAGAGGGGTAGAAGAGGGAATTGGCTCAGTTTTATTTTGTGCTTTTTTTGGGTGGGTGGGTAAAAAGGTTTGTCATTTGCATTGGGTATAAATTGTCGTTTATGGCATTGAATTACGGATATagcctttttattttttatgtgaaGTTTATTTTTCCTAAACCCAACCCCAAAACAGCTGTAACTTAGCTGTCTAGTCATTCCAGTGTTTCTTTGTCACGCTGTACGCATTTTTTCCCCCTTCATTTATCCAAAGCAATACTTTGGATGCATGATAACTGAGGTCAAATGACTTGCACACCCCACTCTATGGAAGCACTTTAGAGGCCTTGACTTACTCAACCCAGCTAGTGGAGCGTGTACCTGAACTTACGCTCTGAAGGAATCTGAATGTGGGAGGTGAGCTGGTTCTCAGGGAGGTAAAATGTGTTGAAGGGCTGTTTCTTtactttttggggggtgggggggtgaacaTTCTGAACCTGTTTTGTATTGTGCCCCCATCTTGGCCACCAGATTCCTATATTTGGTATGACTCCCTCTGGTGTATATTAGAGAAgatctgtgtctttctctctgtgctgAGACCATTTTTAAAAGCTTGTGGCATTTGGAGCAGGTGGTCTTCAACCTTggttctgttttgttttttttcatgGCATTGCTTAATTGATTTAACTTCATCATTCAGGTGGAAAGTCCCCTTGTCTCGCTTTATTCAGGTGAGACTCAATCTCTAATGGAGAGACGCTCCGTCATTCCCAGATATGTTTACCGCCATGCAAAGTGATTTATCAATTAAGCTTTGAGCCAGAACCAGCAGCCCATTAGCGCTACACAACCAGGGCTGAAGACCTACTGATATTGAATGGGTGTAAAGTCTATCTTTCACTacctgtcccttaccctgcctGATTGTGTTATGGTTTGTGTCCTTTTCCAAAGAGCAAGTCTTAACTTTTTTGGAACAAGACTGAGGCCTTTGACTCACTTCACAATTTTTGCATTGAGTTTTGGAATTTGCTGCCGATGCGTTGTTTATACGTGGATGTGGTTTAAGTGAAATATGAAATTCTTGCTGTGTGAGGTCTTGCATTCTCTGTCGGCTTTGACTGACTGCAATGGTGAGGACGTTGATTATCATATTCATTTCTCAGCACTTTTACCTCACTAGTTTTCCTTTTTGGATCAAATGTTTGAAGAggggaaaaataaaaataaagtttgAACCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326022 lncRNA downstream 37794 65782911 ~ 65783661 (-) True G287556
TU326017 lncRNA downstream 44663 65776565 ~ 65776792 (-) True G287552
TU326009 lncRNA downstream 49557 65769601 ~ 65771898 (-) True LOC110504474
TU325760 lncRNA downstream 53250 65767995 ~ 65768205 (-) True G287331
TU325740 lncRNA downstream 63638 65757593 ~ 65757817 (-) True G287311
TU326137 lncRNA upstream 151525 65978862 ~ 65984444 (-) True LOC110520422
TU326144 lncRNA upstream 166436 65993773 ~ 65997590 (-) True G287664
TU326147 lncRNA upstream 170631 65997968 ~ 66000189 (-) True G287666
TU326186 lncRNA upstream 241800 66069137 ~ 66069360 (-) True G287693
TU326190 lncRNA upstream 247846 66075183 ~ 66075418 (-) True G287697
LOC110504474 mRNA downstream 44143 65769314 ~ 65777312 (-) False LOC110504474
XM_036965090.1 mRNA downstream 110889 65709604 ~ 65710566 (-) True LOC110505400
XM_036965082.1 mRNA downstream 124044 65696578 ~ 65697411 (-) True LOC110504464
XM_021597722.2 mRNA downstream 272040 65535814 ~ 65549415 (-) True LOC110520413
XM_021597730.2 mRNA upstream 26384 65853721 ~ 65963424 (-) False LOC110520419
XM_021597731.2 mRNA upstream 26384 65853721 ~ 65963424 (-) False LOC110520419
XM_021597729.2 mRNA upstream 26384 65853721 ~ 65963709 (-) False LOC110520419
XM_036974965.1 mRNA upstream 26384 65853721 ~ 65963709 (-) False LOC110520419
XM_021597732.2 mRNA upstream 26384 65853721 ~ 65963713 (-) True LOC110520419
TU325523 other downstream 240960 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 374172 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 521038 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 585547 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 745470 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 1015334 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1799495 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2056415 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2379253 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2751766 68579103 ~ 68580707 (-) True G290542

Expression Profile