RNA id: XM_021597732.2


Basic Information

Item Value
RNA id XM_021597732.2
length 4449
RNA type mRNA
GC content 0.50
exon number 15
gene id LOC110520419
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65853721 ~ 65963713 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAGGCTGGAGAATGAGGGGAGGAGTTTTCGGTCTTTGCAGCAGTATCAACATGcctgaacatagacagggctagTTCAGAACGTTAGCGTTCGGATCTCAACCAAACAACATGGATCAGAATGACAAAAGGATTTGCACGAATAAAACCCATACATTTACTGGTGACCAGTCACTTCACTGAGGGACCACGACACTTGATTTCTGGACACGTACTTGCCGCCACAATGAGATAATACAGCAGCAGATAATACAGCTGTGACATTTAtaacactgtctgtctggtctgtatcTCCACCCTGAGTTAATTTCCACAATCCAACATGACCACACCAGCTCTACTGCCACTGTCGGGCCGCAGGATACCCACCCTGTCACCCGGCGCCGCCTCTTTCCCACACCACAGGGCCACCCTGAGGCTCTCAGAGAAGTTTATCCTGCTCCTCATCCTCAGTGCCTTCATCACTTTATGCTTTGGAGCTTTCTTCTTCCTCCCGGACAACTCAAAACACAAGCGCTTCGACCTGGGCTTGGAGGACGTGCTGATTCCGCACATCGAGGCGCCCAAGGGGGCTAAGCATCCTGGTGGACAGGTGGTCatacatggacagggggaccaTGATGAACACAGACACAGggaggaggaggagagcttgCGGGATAAGATCCGAGCGGACCACGAGCGGGCGTTGCAGGAAGCCAAGGAGAAGCTGAGGAAGTCCCGGGACGAGCTGCGGGCTGAGATCCAGACTGAGAAGAGCAAGGTGCTGGAGGACCTGAAGAAGGAGGGGCCCAAGCCGTTACCACCGGTCCCCATGCCCAAGGTGGTGGGGGTCAACGATGGAGACCCCGGGGAGCCCGACATCAAGGAGAAACGAGACAAGATCAGAGAGATGATGAAGCATGCGTGGGACAGCTACAGACAGTACGGATGGGGACACAACGAGCTGAAACCTCTCGCCAAGAAAGGACATTCCACCAATATCTTTGGTAATTCCCAGATGGGGGCCACCATAGTAGACGCCTTAGACAGCCTGTACATGATGGGACTTCACGACGAGTTCAAGGACGGACAAGAGTGGATAGAGCAGAACCTGGACTTCAGCGTGAACGCTGAGGTGTCTGTCTTCGAGGTCAACATCCGCTTCATTGGAGGACTGCTTGCCGCCTATTACCTCTCAGGACAGGAGgtgtTTAAGGTGAAGGCGGTTCAGTTGGCTGAGAAGCTGCTCCCAGCCTTCAACACTCCCACAGGCATCCCCTGGGCCATGGTCAACCTCAAGAGTGGTGTGGGTCGTAACTGGGGCTGGGCGTCAGCAGGCAGTAGTATCCTAGCAGAGTTTGGAACCCTCCACATGGAATTTGTCCACCTCACTTACCTCACCGGGAACCCTGCATACTATCAGAAGGTAATGCACATACGGAAGCTGCTGGCCAAAATGGACCGACCCAACGGGCTCTACCCAAACTATCTGAACCCTCGTACTGGCCGCTGGGGCCAACACCATACATCAGTTGGAGGTCTGGGGGACAGTTTCTATGAGTACCTGCTGAAGGCCTGGCTCATGTCAGACAAGACCGACACAGAGGCACGCAAGACCTACGACGACGCTATCGAGgcCATCGAGCGTCACCTGATCCGTAAGTCCAACGGCGGCCTGACGTTCATCGGAGAGTGGAAGAACGGCCACCtggagaggaagatgggtcacCTGACGTGCTTTGCCGGTGGGATGTTCGCTCTGGGGGCCGACGGCTCGCCTGACGACAAGGCTGGACACTACCTACAGCTGGGGGCTGAGATCGCACACACCTGCCACGAGTCCTACGACCGCACCGtgtTGAAGCTGGGTCCAGAGGCCTTTAAGTTTGACAGTGGTCTGGAGGCAGTGGCAGTACGTCAGAATGAGAAGTACTACATCCTGAGGCCAGAGGTCATCGAGACCTACTGGTACATGTGGAGGTTCACCCACGACCCCAAGTACAGGCAGTGGGGCTGGGAAGCAGCACAGGCCATTGATAAGTACTGCAGGGTCAGCGGTGGGTTCTCTGGGGTCAAGGACGTTTACTCGTCCAACCCAACCTACGACGATGTCCAGCAGAGCTTCTTCCTGGCCGAGACGCTCAAgTATCTGTACCTGTTGTTCTCCAGTGATGACCTGATGCCTTTGGAGAGCTGGGTGTTCAACACGGAGGCCCACCCCCTGCCGGTACTGCACCTGGCCAACCTCACCCTCccagggagccaggcccagcggTAGAGACCAGTGGCCCTGcctgcctccatctctccctctcactgctACAGACTGCAGAAGGAGAGCGCTCAGACCACTGCAGAGTGAAGGCACTGAAACAATAGCCTTTCTCACTcgctctcctttcattctctggCTCGTACTCTTTCTATAGCTCCCTCTGCTTATCGTCAGGACGGAGGGTGCGTTCGACTTTTGTGATTGGCTGGGAAGTCCTCCTATTCGTTGTTACTTTTTTGTTGAAACACAGAGCCACAATCAGGAAGCTTGATTTGTTTTGGCCAAACTGTCTTTTAATGGACGCACACAGGAGCAAGACAGTGTCAGAACAAACAGACAGATGGACCTTCCTCTGAAGGGATGTGTATGTttcagacagaccgacagactgACAGTCAAACTGAAGACTATGGGATCTATAGGGTTTGTTTTCTTTTGTCATTTTgtgtcctggatgctgattggcggGGACACGACAGACTGCGACCGTCCTAGTCCTTCTGCCATTTCCTGTTCACTGTCTTACTCTGAACTTTGACCTGGAACTGTATCAGTGTCACTTTGTGGATGGGAGCAACGGCTTCATGTCTACCCTTCTGGAACCTTTGAAAAGTGGACCGGGGATATGGAACTATTTTCAATAGCATTCTCTATGCTACATTCTGCTGtttctgtcacacacactctctctccctctgtatcgccctctccttccatctcttaTGATTAGCAGGTGACGTAACTTAGCCTGGCCTCATGTTGTTGCTGCTATTCAACCGATGCTGCATCTCTACCTCGTCTTACCACACCATTCCAActccctccatcttctttttcttgTCATTCTTCACTTCTCCAATCACGCCTTTCTAGCCTGGTAAACTTCCGTTCCTGTCTTTTCCATAAATCACTACCACTCCACAGGCAGATTGGGACAAGgcttgttttggtagtgttttctGTCTGCTGATTTTAAATGGCCCCTATAGATAAATTGTTATGCACTTTGTTGTTTGTATTACTAAGAGGGAAAATAGTTACACCACTGTTGGAGCTGAAGACACAAAGCCCTCCATTTATAATCCCTGTGTCTTTGACATGGACCCAGAGTGTTGCACTGCCACTGATGGGTTGGGCCTGGAGTTGTTACTCTTCAGGAACAACTCCTCACACTGCTGATAGGATTCTACCCAAATTGTTTCTTCTTCTTATCCTAATCACCACTCGCAAATTAGGACTTGGCCTCAGTCACCTGTGCAATGAGAATGTTGAATGTTATGCCATTCATTCTCTATGGACTTGTGTGTTCTAAATGgatctattgtgttttgtgtgaATGTGGTTTCTGCAACAGCAGATGGAACACAAGGAAGTCTGCTGTGTTCAGTGATGAATCTGTGATTGGTGTGTGGAGGGGAATGGTTTAGGGGGCTGACGGTAACACTAGGAAATAGAAGGGTACCCTGAAAGAAAAAACATTTTTGTTGGACCTATACATTTATTTAAAGCCTTATCAAGTGTTACTATGTGATGCCTTTCACCAATACTGTGCTTTTTCATTATCATTTTTTTACAAAAAGATTCATAAACTAGTTCCTTTTCTATAAGCCACCCTGCTGTCCCTCTAGCAGAGACACGATGATGATGGGCTGATTACAGAACCACTCACCTTGCCAATCAATAAAGCCATACAATGTGTGTCTCTGTTTAGCTAATTGGTTGGTTACTGTCACTCATTTCTCATGTGTTAACTGAGTACCACctgtccctccatctcaccaTTCCTTTTTCCTCTGCCTCTTTTTACTCTGTCACACCCTTTCTACTCCTTCATATCCCTAGAATTTTCtatttgtctctttctccccagctatccctccccctgtccccagctcaGTGTCTCCTTCTCGTGGTGGAGGCAGTAGCAGCAGCCTACTGGTGTAGAACGTTATGAAGTATATGTATCACTGTTCGCCCCCCTGCCCCCACCTTACTCTCTGACATTACTGCTTTCTGTCTGGGGAGGAAGCCCAGGCCTTTGGCGCTGTCAGTCGCCGTGAGAATGTTGATTTTGAAGGAAAAAAAGTGTtctgtatttgtatttttactgAACAAATAAAGACATGTAAATATGTTTAAATGAGACACAAATTCAATAAAGATCTTATGAAAAGTGAACAGAATAACTAAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326049 lncRNA downstream 31131 65821455 ~ 65822590 (-) True LOC110520418
TU326022 lncRNA downstream 70060 65782911 ~ 65783661 (-) True G287556
TU326017 lncRNA downstream 76929 65776565 ~ 65776792 (-) True G287552
TU326009 lncRNA downstream 81823 65769601 ~ 65771898 (-) True LOC110504474
TU325760 lncRNA downstream 85516 65767995 ~ 65768205 (-) True G287331
TU326137 lncRNA upstream 15149 65978862 ~ 65984444 (-) True LOC110520422
TU326144 lncRNA upstream 30060 65993773 ~ 65997590 (-) True G287664
TU326147 lncRNA upstream 34255 65997968 ~ 66000189 (-) True G287666
TU326186 lncRNA upstream 105424 66069137 ~ 66069360 (-) True G287693
TU326190 lncRNA upstream 111470 66075183 ~ 66075418 (-) True G287697
XM_036974964.1 mRNA downstream 13243 65821455 ~ 65840478 (-) False LOC110520418
XM_021597728.2 mRNA downstream 26384 65821455 ~ 65827337 (-) False LOC110520418
XM_036974962.1 mRNA downstream 26596 65821455 ~ 65827125 (-) False LOC110520418
LOC110504474 mRNA downstream 76409 65769314 ~ 65777312 (-) False LOC110504474
XM_036965090.1 mRNA downstream 143155 65709604 ~ 65710566 (-) True LOC110505400
XM_021597733.2 mRNA upstream 9767 65973480 ~ 65978709 (-) True LOC110520420
XR_005051356.1 mRNA upstream 15112 65978825 ~ 65984111 (-) False LOC110520422
XM_021597734.2 mRNA upstream 15114 65978827 ~ 65984125 (-) False LOC110520422
XM_021597735.2 mRNA upstream 56320 66020033 ~ 66027337 (-) False ttf2
XM_021597736.2 mRNA upstream 56320 66020033 ~ 66027364 (-) False ttf2
TU325523 other downstream 273226 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 406438 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 553304 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 617813 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 777736 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 878958 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1663119 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 1920039 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2242877 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2615390 68579103 ~ 68580707 (-) True G290542

Expression Profile