RNA id: XM_021597733.2


Basic Information

Item Value
RNA id XM_021597733.2
length 2477
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC110520420
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65973480 ~ 65978709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAGTTGAGGGGCCTGGACGTCGTTTAGTTCTCTGCTTCAGATCGCGAACAACTTCAAACCACGCCTGGGGGTGCAAAGGCTGTTTTTCATTGGACTGGAGAAGAGGGTTTCATGTTTCAAGGAAGAGAACGTACCTAGTGCGGAGTATTACGGAAGAAAAGTTGAGGGTGTAGGAAACAGCGTAACAATAGTTATAGGCCTATACAGTCCTACACGGAATGTTATTTTGGTGTTACGGTATTATGCTGGGGTTTTCTGTTGCATACTAACGTTAACTGTAACCTAGGCTACTGATATAGTTGCAAATTGGTAGCCTAGGTCGATTTCTGACACCGGTATTTTTTATTCTTAAACAAAATCCGGTAACAAATTGTTTTTAAAGAAACGAGACAATACTATAAAACACAATGTCACACTGTGACCAAATTTTGGAAAAAGATGTGGATTCCTCGCCAAGCGCGACCACAAACTCGAGCTCTAAAAACGGAGATAACGGGGGCGTCGTGATCAATGCGAGGGCAGTGTGCCGCGTTTGTAAATGTTTATATCGCGAGCCTAAAATTATGCAGTGTTTACACACCTTCTGCGCAGACTGCGTTCGTCAACTGGAACCATTTTCGGTGTCTTCGGGAGTACACAATGGTAAAGCGGTCCCTCTGGCAGGCGAGCCGCCCTCTGCCGTCACCGTTCTCTGTCCGGAGTGTGACTCCGAGGTGGATATCCCGTTGTCCGGAGTGGACGGGCTGACCACTGACCACTTGGCCCTGGACGAAGTGTTTCTGGAGACGCTGATGAGCAAGAACTCTGTGGTATGCGACCTGTGCAGCGACGGGGACGCAGAGAAGCGTTGTGAGGTGTGCAGTGTCAACCTGTGTGAGTTTTGTATTCAAGCACACAGGAGACAGAAGAGGACGTCGTCTCACACCGTCCAGTGTCTGGAGGACCTGAAGACCCAGGGTTGTCTCTCTCGGCCCGTCCTGTGCTCCCTCCACCCTGCCCAGGAGCTGCGTCTCTTCTGTGAGCCCTGTGACCTACCTGTCTGCCTGGAGTGTGCCGCCACCTTCCACCGCGACCACCGCTGCCTCCCCACACGTGATGTCATCGATCGCCATGGGGGCCGTATCCGGGATTTGGTTACCGGGCGCCTGCGGCCACGGCTGGACCAGCTGGAGGAGTCACTGCGGAAGGTGGACCTATCCCAGGAGACCTTGCAGACCAGGGTGGATGCGGCGGTGGACGAGGTGCGTTCCTTCGCACGAGGCTATGCTAGCGCTGTGGAATCGCACTGCCTGTTGCTGCTACGGCGCTTAGAGGAGCTGGGTCTGCAGCGCAGGAGTCATCTTCATCTGCAGAGGGCGCAGCTGCAGCAGGCCCTGTCGGACACCCGCAGGGGGGTGGAGTTTGCCGAGCGACTGCTGACGTGCGGGTCGGACGCAGAAATCCTCAGTGCTAAGGACGTGACCCTCCGCAGGCTGGCTGTCCTGATGGAGACGGGTTACAACCCCCCCCCAGAAGCCGTCTGCCCTGATGAAGGGAGCAGTATTTGCTTCCTGCCACAGGAGAGTGCAGGCGAGATGGCGGGGTACCCGATGGTGGGGGTGATCCACACCAAGACCCTGGAGCTCAGCAGGTGCACCATTGAAGGGGAAGGTCTGCAGCGTGGCAGGGAAGGCCAGAGAGGGGAGTTCACCCTGGTGTGTAGAGACTTCGCTGGGGAGCAGATGGGTCGTGGAGGGGAAGCTGTCCTGGTCAGTATGGTCCACAAGGAGAAGAAAGACTGCAGAGTGGAGGCGGCGGTGGTGGATAACAATGATGGCTCCTATTCTGTCTCCTACACCCCCATGGAGCCAGGGCCCtactctgtgtgggtgtgtgtcaagGCCCTACACGTTAAGGGTTCCCCCTTTGTCCTGAATGTGAGGAGACAGGTCCGGTGGCACCGTGGAACGTTCCACTGCTGTTCCTTCTGCTCCAGTGGGGGTTCTAAAGAGGCCCGTTGTGGCTGCATGGGAACCATGCCAGgagGGTTCCAGGGCTGTGGTCACGGCCATAAGGGTCACCCCGGTAAGCCCCACTGGTCGTGCTGTGGAAGTACGGTGGAGGCCTCAGAGTGCCTGCCACAGAGTGTCATAACGGCAGTGGGTGGAACAATAACAGCAGTGGGGGGGACAGGCTCGCCTCGGGGCCACCTTAGGACAGTGGAGCTCTGAGGGACAGGGCCAGGACACCCCTATCCCCACCAGATATCATGGTCTACAAATCAACCCTTTCAGAATTTCTATTTATTTCTATTTTCAAGATGTAGATTTTATACACAAAACAATATTTGTTGTGATCCGCTACTGTAGCTAACTATTCTGTCGTTTCTATTGTTTTGCATGTGCATGTTACATCACAAGACTGATTTAGTGCCTTTCATGTATTTGAAAGACCATTATTTTTATTCTGAAATAAATAACACTGGAATAACTTAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12021 TRIM45; tripartite motif-containing protein 45

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326049 lncRNA downstream 150890 65821455 ~ 65822590 (-) True LOC110520418
TU326022 lncRNA downstream 189819 65782911 ~ 65783661 (-) True G287556
TU326017 lncRNA downstream 196688 65776565 ~ 65776792 (-) True G287552
TU326009 lncRNA downstream 201582 65769601 ~ 65771898 (-) True LOC110504474
TU325760 lncRNA downstream 205275 65767995 ~ 65768205 (-) True G287331
TU326137 lncRNA upstream 153 65978862 ~ 65984444 (-) True LOC110520422
TU326144 lncRNA upstream 15064 65993773 ~ 65997590 (-) True G287664
TU326147 lncRNA upstream 19259 65997968 ~ 66000189 (-) True G287666
TU326186 lncRNA upstream 90428 66069137 ~ 66069360 (-) True G287693
TU326190 lncRNA upstream 96474 66075183 ~ 66075418 (-) True G287697
XM_021597732.2 mRNA downstream 9767 65853721 ~ 65963713 (-) True LOC110520419
XM_021597729.2 mRNA downstream 9771 65853721 ~ 65963709 (-) False LOC110520419
XM_036974965.1 mRNA downstream 9771 65853721 ~ 65963709 (-) False LOC110520419
XM_021597730.2 mRNA downstream 10056 65853721 ~ 65963424 (-) False LOC110520419
XM_021597731.2 mRNA downstream 10056 65853721 ~ 65963424 (-) False LOC110520419
XR_005051356.1 mRNA upstream 116 65978825 ~ 65984111 (-) False LOC110520422
XM_021597734.2 mRNA upstream 118 65978827 ~ 65984125 (-) False LOC110520422
XM_021597735.2 mRNA upstream 41324 66020033 ~ 66027337 (-) False ttf2
XM_021597736.2 mRNA upstream 41324 66020033 ~ 66027364 (-) False ttf2
XM_021597737.2 mRNA upstream 41324 66020033 ~ 66027601 (-) True ttf2
TU325523 other downstream 392985 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 526197 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 673063 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 737572 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 897495 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 863962 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1648123 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 1905043 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 2227881 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2600394 68579103 ~ 68580707 (-) True G290542

Expression Profile