RNA id: XM_036964598.1


Basic Information

Item Value
RNA id XM_036964598.1
length 610
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC118944607
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66472339 ~ 66475059 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACATCACAGGCTCTGAGTTGGGGCCTGATGCCAAAAACACCCCAAAAACAGTTCAGGAACAGACGGGTACAGATACATTTTGACACCAGCGACAGGTGACAGTCCAGTTGCTGATGTTACAAAACCGAGGGTGCAGCCAGACTACTAGACTGCTGTCTGAATTGAGGAACTCTATAGGTAACAATGAGACAGGCCACAGGACACAGCAGTGACAACCAGAGGAAGAATGCAACTCAGGCTGGATCTGTTGTGTTTCTCTCCAACCCTTTGATGAGTGATATTGAGTCAGATTGGTCCCCCATTCATGATGCAGCCTACAATGGACGTGTTCTCACACTGAGAAACCTAATAGCTCAGGGAACGTGTGTCAACCTGGTCACTCTAGAAAGAGTCTCTCCCCTTCATGGAGCCTGTCTGCAGGGACACACTGCCTGTGCCAAGTTACAGATAGAAAATGGGGCAAATGTGAGTAAGGAATTCCACTCTATCTGCACCCTCTCTGGCTGATTTTAAGACTCACACAACACAGGGTTGTATACATGTTTATTGACATGAGTTTGATTGAATTTAATCacacaagcgccatgctctaccaactgagctacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326702 lncRNA downstream 51409 66418818 ~ 66420930 (-) True G288172
TU326639 lncRNA downstream 136423 66335701 ~ 66335916 (-) True G288116
TU326501 lncRNA downstream 149743 66322367 ~ 66322596 (-) True G287993
TU326500 lncRNA downstream 150147 66321993 ~ 66322192 (-) True G287992
TU326484 lncRNA downstream 163029 66309078 ~ 66309310 (-) True G287976
TU326763 lncRNA upstream 52626 66527685 ~ 66532169 (-) True G288230
TU326819 lncRNA upstream 69608 66544667 ~ 66544890 (-) True G288284
TU326821 lncRNA upstream 74642 66549701 ~ 66550419 (-) True G288286
TU326822 lncRNA upstream 80127 66555186 ~ 66555423 (-) True G288287
TU326823 lncRNA upstream 80509 66555568 ~ 66556204 (-) True G288288
XR_005051358.1 mRNA downstream 59966 66400067 ~ 66412373 (-) True LOC118964314
XM_021597740.2 mRNA downstream 176452 66268185 ~ 66295887 (-) True LOC110520429
LOC110520425 mRNA downstream 278852 66183116 ~ 66193487 (-) True LOC110520425
XM_021597738.2 mRNA downstream 402205 66036342 ~ 66070134 (-) True rnf17
XM_021597737.2 mRNA downstream 444738 66020033 ~ 66027601 (-) True ttf2
XM_036974988.1 mRNA upstream 15409 66490468 ~ 66537895 (-) True LOC110520431
XM_036974989.1 mRNA upstream 257178 66732237 ~ 66746474 (-) False LOC110504514
XM_036974991.1 mRNA upstream 257178 66732237 ~ 66746475 (-) False LOC110504514
XM_036974994.1 mRNA upstream 257178 66732237 ~ 66746476 (-) False LOC110504514
XM_036974995.1 mRNA upstream 257178 66732237 ~ 66746476 (-) False LOC110504514
TU325523 other downstream 891844 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 1025056 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 1171922 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 1236431 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 1396354 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 367612 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1151773 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 1408693 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 1731531 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2104044 68579103 ~ 68580707 (-) True G290542

Expression Profile