RNA id: XM_021597780.2


Basic Information

Item Value
RNA id XM_021597780.2
length 5265
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110520452
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67545597 ~ 67568698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGCAATGCAGTTTGCTAGCCATTTCATCTCTAAGGAATACAGCCTGGCTGCTCTCCAGCCTAGGTCAACTCAATGTCCATGTATGTATAAACGGCTGTAAATACCAGCCAagattctacctctactatattGGACCACAGGTTGTCCACatcactctgtgtgtctctcttgttATTTCCTGATCCactctctgtctataggctgctCCACTACAGGTCCCTATGGTAAGAGTTAAGTCATGACACCCACTTTTCCAATCCTCTGTAGCCCTCCGTTTACAGTGTGTTCACTAAATGAAGTGCAACCTCACTCAATGCAAAGTGTGTAGGCCTACTGTCCAACCAcaaccccatccctccatctctaaacATACAGGATTATCTTACTCTCTTTTATTGACAataactctctttctctatatagtACAATACAGACCACAGACTCTCTCCATGCCGACGCAGCCTATTGGCTCATCTGCCTACCTGCTCTGTAACGTCCCCTGTGCTCTGATCAATGTCAAAGAGACGTAGCTGAGTGATGTGCAATACCCAGTGTGCTCAGTGTTACATACCTCATAGCCCATTACTCGGAGACAGATATTATAAACCAATACGACAGCTATGACAGTGTACAGATGATCCATGGTGCTACCAGTGTATTACAGTAAATCCCTATTTATTACTGGGCATCTGGGAATGGAACAATCTCAGATGTGACGACAAAGATGGGAAGATACCAGGTGGTGCTATGTATACATCAGGACAAATGACTGGAACTTCTCTTTTGACTAGTAATAACACATACGTAAAACTTGTCATTTTTGTTAACATATTTTTCAATGCAGTGCATCCCTCCCCATTGTATTTAAACAAAACTGTCTTACCTTCAGCCAACCACTTTCTAAAAAACAATAACTCCTCTCATCCAGCTCCACCACTCCTCCTTTTCCATTCATATCAAATTAGCTCTCTTCTCAACTACGAGTTATTAAGAGGGAGGTTTCCTTTTAAGTGGCTTGTCTTTAGGAAATCATATTGTTTTGGATTGCTTCCTCTGAGAATAAGAACAGGAAGTAAAGTAAAGGAGGCAGACACTGAGACCGCTCGGGCCTACTCCAACCGATTGAGATATCCGCTCTGTCCCCGTTTCTCAGTGTAGCTAAGATTCCGTTCCCACCACTCTACTgccggtgtgtatgtgtgtttgtccagacagactgacagactaaTAATTGCTCCAGTGACAGGTCTGTGCCCCCGGTGGCCGTGCTTCTACCTCTCACCCCTCTTACCCTCCTCTGACTGACCATGCCAACTCTGTCTGGGaacaaaaaataattaaaataaagtCTGAGAAATAAACATAGTCAGAAATATCAAGAGTGACTCTTAAGGGTGCGGGTCTAAAGCTTACTGGAATGCTCAAGACACAGAATGAAGAACAATAACAAAAGACGACCTCACCACTTTGAGCAAACTTTGTCTGAACATACCATAACTTACTTCAACTAACTAAGCACAACATTAGTCTATAGGAGTCTATGTATACTTCTGACTTCATCATGGTCCTAATAATGTAGCTAATGTTGACCAGCAAGGCTAGACAGCCTGTAGGTTGTGTTGTAAACTTGTGAGGAAACCCGTTGTCAGTCCAGCCTGGTAGCAACATGACTGTTTTAACTCCTACCTCCTGCTATTGTTAAGGCCAGGCTCTCACTCCCTTCCTCTTGTCTAGGCTAGCTACACCTGTTTTTTTGTGGCTTGCTGTACACACATTATCTAATGCCAAGAAAGCATTATAGCTAGCCAAAGCTGTGTTGATTTGATAGTTGGATATTGAGAGTTTTTTTAAAGACCCTGTGGCGAATTCAATTACTTTGCGAGCATTTAGGGAGCATGGAATTTAAGGGTTCTAGCTTAGCTAACTCTCCTACATATCAGTTCTGAGCTCAAGGCATGGATGGACACCGCTAACATTTCCCCTCTCCTGTTCTCATAGTGGTGCTTTTTCCAGTGTTCCAGTCTCATTgaacctctcccctcccctcccctcctcacccctctcccctccctgaaACGCAATCCGCCTGGGGGGATAAGAGCACTGACTCTGCTTGGAGCACCACCCGGTTTCCATCCTGCTGCCATAAACCAGGGAGAGAGAACTGCAAAACGTCTCATGGTCATGGTCACTTcacagggagggtgagagaggcagATAAGATGGAGCCAGTGTCCTACTCAACGTTCAGTCTTAATCATGTTCTAAGAGAATTTCAACTAACATTTCAAACCAGCTTTATGGATAACTATCAATGGGATATGACACACACGgtGTGCCAGTGACCAGTGACGAGTGAACAGACATGGGGGACTGGAGTCTTCTGGGGAACTTCCTGGAGGAAGTTCAGGAACATTCCACGTCGGTGGGGAAGGTGTGGCTCACCGTCCTCTTCATCTTCAGGATCCTGGTGCTGGGCACAGCCGCTGAGTCCTCATGGGGAGACGAACAGAGTGACTTCCTGTGCGACACCCAGCAGCCTGGTTGTACCAACGTCTGTTATGACCGGGCGTTTCCTATCGCACACATCCGCTACTGGGTCCTACAGATCGTCTTCGTGTCCACACCATCACTGATCTACATGGGTCACGCCATGCACATAGTGCGGAGGGATGAGAAACGAAAAAGGAGGGAGCAGGAGAAgacagaggggatggaggaggaggaggagaagggagagggggggagcgtATCGGGGGAGAAGGTGTATCTCCAGCAGAGGGATTGTGGGAAGGTGCTGGAGGCATCTGGGCGAGTTCGCCTGCGGGGGGCGCTGTTATCCACGTACATTCTGAGCATCCTGATCCGCACTGTGATGGAGGTGATCTTCATCGTGGTCCAGTACATGATCTATGGAGTCTTCCTCAGGGCTCTGTACCACTGCAAGGCCTGGCCCTGCCCCAACCCAGTCAACTGCTACATGTCCCGGCCAACAGAAAAGAACGTATTCATCGTCTTCATGCTGGTGGTGGcaggtgtctccctcctcctctctgtggtcGAGCTCTACCACCTGGCCTACAGGCGGTACAGGAAGTGCAGACGCACTCGTGCCTCCCTCAAAAACACCACTCATAATGCTGTGGCAATCCCCTTCACCAGGGACGCCGACAACCCAACCAGTCACAACTCCCCAGGCTGCACCCCTCCCCCTGACTTCCGCCAGTGCTTGGTGTTGTCGGGGACAATGACCCCCTTGGCCCCTGTGAACCCCATGAACTCCATGCCTCCTCACCCcttcaacaacagaatggcgcACCAGCAGAACTCCGTCAACATGGCCACCGAGCGTCACCATTCCCATGACGacctggagggagagggaggtttCCTGAGGATGAACTACACCCAGGTGCCAGGGGAGATGCCCAGCGGGTGCTCTGCGCCACCCTTACTGCATACCGCGTACCTGAAGGACAAACAGAGTCTCAGTAAGATCAGCAGCACCAGCAGCCGGGTTCGACCAGACGACCTGGCCGTGTAGAaccagacagacggagagagagagacagagaggggcttagaaggtgtggagggagaggactttcagacacacagagagagaaatgccCTGCTTAGAGGAGAGTGGAGCAGGCTGGGTCTATATACCCagccagagacagagaaggggagcAGGCAAGGCAGACACGGGGGCTAAAGATGGATGTGTTAGCAAACTCCAAGTGAAGGGCTCCATTCAGCCCAAATCTGGGGAAACTGTGGAAGATTGCCTGGCCTAGGACTCCATGAGCACTACAGGAAGAAAGACATTGGGATCTGTAAGCTCCCTGGGAGTGGGTTGAATGGATCTTGAGAACTTCTGCATATTGGACTGAGCTTTGAGACTGTGACCGTTGGTGCTGGGAGAACTGGTTGTTTTTGTTAGAGCAACAAGTGGTTGGCCAAGCTTGAAACGTGGACTTTCATAACGTTGATCAAATATTGACATGGAAGCAAAATATAAATATACCTTTTAAATCACTGTGTGgaaaaagccttcaaataaataACAGATAATTGCATTGTATGTTTTTGATGTTTTAAAGTACCTTTAAAGTCTGAGAATATTGTACTTTAAACTTGCACATTCACTATGCTAAAAACTGTCCCACTGTCTGTCCAGCTGCCCATTATAATAACACAAACATTTACAAGCTTGCAAATGTAAACACgcatgcacaaaaacacacacatgcacacactgctGTCATAGGAGGACAATACCCTATCCTCAGGGGTCTGACCAAACAGTGTTGCCCCGATCCCTGGCATCCAGTGACGGAGGTTATTTGCAGCTGTCATGTTGTTTGGAAAGTGAAATTGTGACACACATCCCTGCAATGGAATCCATTGTGCATTATATCACCTTCAAATATAGCAGGAGCAACTGTTTTCTATGTGTTTAATCCTGATGGCATACAAACAGAAACAAGGGACAGCTGTGCCAAAATAACTGATTTCTCTCCATTCAACAGACGCTTAGACCAATAATTACAGAGGGTTGTATGCACTCAGGTACAAATAATGAAGAGCTATGCAAAAGTGCCTACAAAATGTGAATCTGCAAAATGTTCAAAGTCAAAGTCTTTTAGCTCCATATTAGATGTGTAAACATGTCCTGATATCATTTAAAAGTGTGTTCAAGagccatatacagtatgtatacaaATAATTGACCTTCAATCGAGGTACAAGTTTGAAAAGTTGATCATCCTTCAGTATATTTCAGCGTTTCTTTTTTGTTAACCACTAGGTGGAGAAATTTCCCCTTGAACCTTTCAAATACAGTGTAGTTCATTCATTGTGACTGTGCAACTGTTGATTGTCACATTAGTAGCTATCCACCTCTCTTCCATATCTTTTCATCCTTGtttaaatttgatttatttttgttTAACTGTGTGAGGCTGGTCAGAAAATGACATGTCTAGGCCTATAGGCTAATAGAGAAGGCATAACCACAATCTGTGAAGTTCTCAACTGATTTTGCACTAGACTAGGCCTTGTGGGGTTTGGAATATAAAGACCCCTTTGTAATTACATGAATCATATTTTCTTTTTCTATAGAGAGCAACAACCAGTAATTTACAGTAATAGTATTTTGGAATGCCAAGAAATGGGTGACTGGTTGACGTTTCTCTGTGCACATTTCAATGTCATTGTGTTTTTGTAAAGTCTGCAATAAAACGAATATGTCAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328118 lncRNA downstream 1364 67543828 ~ 67544233 (-) True G289394
TU328106 lncRNA downstream 26345 67518882 ~ 67519252 (-) True G289382
TU328099 lncRNA downstream 32442 67512914 ~ 67513155 (-) True G289378
TU328092 lncRNA downstream 43468 67501613 ~ 67502129 (-) False G289371
TU328091 lncRNA downstream 43468 67501861 ~ 67502129 (-) True G289371
TU328150 lncRNA upstream 39046 67591065 ~ 67591402 (-) True G289421
TU328480 lncRNA upstream 70099 67622118 ~ 67628501 (-) True G289674
TU328483 lncRNA upstream 72192 67624211 ~ 67631209 (-) False G289676
TU328485 lncRNA upstream 72192 67624211 ~ 67631209 (-) False G289676
TU328486 lncRNA upstream 72192 67624211 ~ 67631209 (-) True G289676
XM_021597777.2 mRNA downstream 3268 67524601 ~ 67542329 (-) False LOC110520451
XM_021597778.2 mRNA downstream 3268 67524601 ~ 67542329 (-) True LOC110520451
XM_036975006.1 mRNA downstream 3677 67524601 ~ 67541920 (-) False LOC110520451
XM_036975007.1 mRNA downstream 3900 67524601 ~ 67541697 (-) False LOC110520451
XM_021597764.2 mRNA downstream 258637 67275729 ~ 67286960 (-) True LOC110520443
XM_021597782.2 mRNA upstream 65471 67617490 ~ 67636658 (-) True LOC110520453
XM_036975013.1 mRNA upstream 133031 67685050 ~ 67706221 (-) False LOC110520454
XM_036975014.1 mRNA upstream 133031 67685050 ~ 67706221 (-) False LOC110520454
XM_036975015.1 mRNA upstream 133031 67685050 ~ 67706221 (-) True LOC110520454
XM_036965132.1 mRNA upstream 224392 67776411 ~ 67786849 (-) True LOC118944713
TU327202 other downstream 702716 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 1965102 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2098314 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2245180 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 2309689 65235180 ~ 65235908 (-) True G286953
TU328494 other upstream 74813 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 331733 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 654571 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 1027084 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 1074313 68626332 ~ 68647620 (-) True G290567

Expression Profile