RNA id: XM_021597782.2


Basic Information

Item Value
RNA id XM_021597782.2
length 1572
RNA type mRNA
GC content 0.40
exon number 5
gene id LOC110520453
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67617490 ~ 67636658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTCTCTCTCAAACGACCActtcctctgttctccctcctcagACTAACGATATGTGAAACTGATCTCTGGCTCTAAAGTTCCACTCCACTCtgtacatttctctctctgtctgtcagtcacgTCCAAGGTCGTCATGGAAATTCTCCTGTCCTGGGACCTAGTGTCTATTGTCGTCATGCTGTTCTTTGTCTGTACAGAGTCAGCAGGTGACTCATCAAAATATCTGAAAAACAAATCAGCTTCTTTGGGAGAAATTGTTACTTTGGTTTGCAATAACTCAGAGACGAATGCATCATACATCTGGAAGAAGGACACAGTTCTTATTTTCTCTCATAGTGACAAACTGAATAAATCTCAAAGAAAATTCACCTCTGACAGGATGAGTGTTGATCCACCTACAAAGCTGACTATCTTTAATGTAGAGTTAAATGACACCGGGAGCTACAGCTGTCAAATAACAGATGATCAAAGTGGTGTACGGACAATGGAGTGGAATTTGACCATCACTAATAACCTCACAGATCATGCTGAATATAACCTACGGGGGTTATTGCTCTTCACAATTCCCTCTGCTATTGGAGGAGTGGTTCTCTGCATTAACATCTGTTGTATGGTCTGGCTGTGTAGGAAACAAATTCCGGAACAGACAAGTCATTGTGATAGGCACGGAGAGGTGCAGCAGGAATGCAATGAAGAGATGATTTATGAAAACTGTCTAGCTACAGATGCTACACAACGCTGTCAACATGGACCCACAACACTGAGAGAAAAGGAGGCACATTAAACAGGATGAGAACAGAGAATGTGACTGAGGGGTGGAGGTGTGGGTGAGAAAATGTATAGCATTTCTATTTCAGACATTGACCACCTGATAACAACAGTGCTGAGGTGATGGAAATAATGTATATGGACATAATTTGTACCAGAGCATGAGAGACAGATACGTCTCTGTACTATATAGTCAAAAGATGGTGCTCAGGGGTTTAGGACTGGTTAGACTGTTGTGGGCTAGAATTTGCATAGAAGATGGAAAGCTAAGCCTTGTTTacagaaaaataaaaaatgaaattattTGTATCTATGGATCAAATGCAATGTATCTCAGAAAGTCACACGTTGTTTCTAGATAGCAGTGGCCTCCCTGCATTATTTTTAGAAGAACATTGAAATAATGTATCCACCCAGTTGATGTGTGTCCAGGCCCTGAAATAGACATAAAGCAACAAGAAGGCCTGGAAGTTAGGTGTAAGGAACTACATTGACATATTAACagcaacgacaacaacaacaaatgaaaATCCTGTACACTATGAATAACAACATGAGTGAAGAACAACTACTGTAAAGTGTACACATATAGAGAAACATGCACCCTGCAGAATGACAACTTAAGGCCACTGGTCACACCATGATGGGAGAAAGACGAAGTGGTATAGAGAGGCCTGGGAAAGAGTTGGTGCAGGTGTCAAACTGTTAAATAAACGTTATTTGTGAATACATGTGCGAATAGAAAATTGTAACATTTCCTGCACTtggtaaataaaaacaaattgtCATTATTTACATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328150 lncRNA downstream 26088 67591065 ~ 67591402 (-) True G289421
TU328118 lncRNA downstream 73257 67543828 ~ 67544233 (-) True G289394
TU328106 lncRNA downstream 98238 67518882 ~ 67519252 (-) True G289382
TU328099 lncRNA downstream 104335 67512914 ~ 67513155 (-) True G289378
TU328092 lncRNA downstream 115361 67501613 ~ 67502129 (-) False G289371
TU328449 lncRNA upstream 42204 67678862 ~ 67680167 (-) False G289652
TU328450 lncRNA upstream 42204 67678862 ~ 67680167 (-) False G289652
TU328451 lncRNA upstream 42204 67678862 ~ 67680167 (-) True G289652
TU328432 lncRNA upstream 68376 67705034 ~ 67881378 (-) False G289649
TU328437 lncRNA upstream 68376 67705034 ~ 67820036 (-) False G289649
XM_021597779.2 mRNA downstream 48792 67545597 ~ 67568698 (-) True LOC110520452
XM_021597780.2 mRNA downstream 65471 67545597 ~ 67552019 (-) False LOC110520452
XM_021597777.2 mRNA downstream 75161 67524601 ~ 67542329 (-) False LOC110520451
XM_021597778.2 mRNA downstream 75161 67524601 ~ 67542329 (-) True LOC110520451
XM_036975006.1 mRNA downstream 75570 67524601 ~ 67541920 (-) False LOC110520451
XM_036975013.1 mRNA upstream 48392 67685050 ~ 67706221 (-) False LOC110520454
XM_036975014.1 mRNA upstream 48392 67685050 ~ 67706221 (-) False LOC110520454
XM_036975015.1 mRNA upstream 48392 67685050 ~ 67706221 (-) True LOC110520454
XM_036965132.1 mRNA upstream 139753 67776411 ~ 67786849 (-) True LOC118944713
XM_036975011.1 mRNA upstream 200047 67836705 ~ 67881414 (-) False LOC110520455
TU327202 other downstream 774609 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2036995 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2170207 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2317073 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 2381582 65235180 ~ 65235908 (-) True G286953
TU328453 other upstream 247094 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 569932 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 942445 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 989674 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 1073709 68710367 ~ 68717385 (-) True G290598

Expression Profile