RNA id: XM_036975013.1


Basic Information

Item Value
RNA id XM_036975013.1
length 2000
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110520454
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67685050 ~ 67706221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCATTGTGCTATAGCTGCTGTGGCTTACTGAATTAGTGTTTTCCAACAGTAGGAGGACATTTTTCTGTCAGCACAAACATCAAAAACAAATGTCTGCTATTTCAGCAGAGGAACTTCCATTCATCAAAAGCAATGAGAAGAGCAAAGCATGTTACTGAAGCTGAGCTGTGTGATTCTACTCATCATCCAGAGGGATACAGAAAGTACACGGGTCATTGGTGAATGCAGGACTGTGGTACAGGGGGAGGATGTGGACTTATCCTGCAGACTGATAGAGACAACTGAGGACCTCGAACAGATAACATGGCAGAAAAGTACTTGGGAAGAAACACAGAACCATAATTTTATGCTGATTTATCCCAATGGGGTTACTAAATTTATTGCACCGAATGGATTGAGTGGTAGAGTCCAGTTTATTGGGAACCCATCAGAAAACCTTGGATCTATTCGAATAACAGCTGTCAGACTGTTTGATGAAGGCACCTTCACATGTATCTTCAGTGTTTTCCCTAGTGGAGCATACACTACAGAGATACTTCTGACTGTGCTTGTTCCTCCAGTAGTGAGTGTGACAGTTTATGTTCCTCCTGTCACTGGGGAGAATGAGGTTGTCTTAGCAACCTGTATGGCTGCTGGTGCCAAGCCACAGGCAGAAGTGACATGGAAGACGGGTGCATTTGGCAGTTTGTTGAGGACAGTGACTAACTTCACACAGCACACCAATGGAACCACCACAGTACTCAGCCACCTGCTAGGGTTGCCAACCAGAGCAGCCAATCAGCAGCAGGTCCAGTGTGTGGTCAACCAGTCTGCCCTGGCAACAGAAAGGAGCTACAACTACACCATAGATATCCACTaTCCACCTCAGACAGTGAACGTTACCTTTAGTGAGGCCTCTAAAGACACAGTCTTACTATGTGTAGCAGATGGCAACCCACACCCCAACTACACCTGGAGCAGagTGGCCCAGCCATGGCCTGAGTCTTCAGTGAGAGCAGAGGGAGACATAGTGCACTTCCTCAGTCTCAGCTCTGAGCTGAATGGTCTCTATGTCTGTGAGGCCTCCAACCCCTACGGACGAGCAACTGGTTCCCTCAATGTACACATATTCTCTGagACCTCTGCTGCCTGTTGGGTTCTACTCGTTGTCATTCTCTGTCTGATTGTTGCTGCGGTTGCACTCATGTTGTACAGGTACAAATACGGACAGTTTCCTTGGAGTCCAATCATTGCCAATAACCAGTTCCAGGCACCACCACAGGTTGAGGAAGATGAACCTGGGACGTCTGGGTTCTAACACTCCAAACCAGGAAGGTGGATAAGGGAGAAGTAACGTGATAAATCACTGGACAGCCTGAGAACAGATGCCAGAAGAAGCGCAGACATGCACTATGTGGGGGAAGAATTCCAGTCTGCACATTCTCCAACGCTACAGCCATTTGCAAGAACAGGCACATTCTccaactttaaaaaaatatgtatttaactaggcaagtgacttaagaacaaattcttatttacaatgacggcctacaccggccaaactcggACAACGCTGGGAAAATTGTgcgacgccctatgggactcccaatcacagccagttgtgatacagtctggatttaaaacaggttgtctgtagtgacctctctagcactgagatgcagtgtcttagaccactgtgccacttgggagcctaATGAACAGGGACCCTATGCAGGATTCTCTGTGACATTAGAAACCTCAGCTtggcccctcctccaccacagCTTTAAATAGTGCTGGTCCTCGTTTCCATTTTTGTTCCCCTCTCATGGACTCTGCCTTGCCGTGGTGGAGGGGCATTGTTGCTTCAGTGGGAACAACAACTTTCCTTTATGTAtatgcactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaaatacttttttctttacatagttgaatgtgctgacaacaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328449 lncRNA downstream 4883 67678862 ~ 67680167 (-) False G289652
TU328450 lncRNA downstream 4883 67678862 ~ 67680167 (-) False G289652
TU328451 lncRNA downstream 4883 67678862 ~ 67680167 (-) True G289652
TU328488 lncRNA downstream 53238 67625400 ~ 67631812 (-) False G289677
TU328490 lncRNA downstream 53238 67625400 ~ 67631812 (-) True G289677
TU328532 lncRNA upstream 47079 67753300 ~ 67808257 (-) True G289716
TU328471 lncRNA upstream 194569 67900790 ~ 67915943 (-) True LOC110520458
TU328571 lncRNA upstream 217711 67923932 ~ 67924167 (-) True G289754
TU328574 lncRNA upstream 223250 67929471 ~ 67929673 (-) True G289757
TU328576 lncRNA upstream 225122 67931343 ~ 67931791 (-) True G289759
XM_021597782.2 mRNA downstream 48392 67617490 ~ 67636658 (-) True LOC110520453
XM_021597779.2 mRNA downstream 116352 67545597 ~ 67568698 (-) True LOC110520452
XM_021597780.2 mRNA downstream 133031 67545597 ~ 67552019 (-) False LOC110520452
XM_021597777.2 mRNA downstream 142721 67524601 ~ 67542329 (-) False LOC110520451
XM_021597778.2 mRNA downstream 142721 67524601 ~ 67542329 (-) True LOC110520451
XM_036965132.1 mRNA upstream 70190 67776411 ~ 67786849 (-) True LOC118944713
XM_036975011.1 mRNA upstream 130484 67836705 ~ 67881414 (-) False LOC110520455
XM_036975009.1 mRNA upstream 163179 67869400 ~ 67881414 (-) False LOC110520455
XM_036975010.1 mRNA upstream 163179 67869400 ~ 67881414 (-) False LOC110520455
XM_036975012.1 mRNA upstream 164694 67870915 ~ 67881418 (-) True LOC110520455
TU328494 other downstream 51557 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 842169 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2104555 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2237767 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 2384633 65298207 ~ 65300417 (-) True G286985
TU328453 other upstream 177531 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 500369 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 872882 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 920111 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 1004146 68710367 ~ 68717385 (-) True G290598

Expression Profile