RNA id: NM_001124672.1


Basic Information

Item Value
RNA id NM_001124672.1
length 1368
RNA type mRNA
GC content 0.53
exon number 8
gene id nr1i2
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68125603 ~ 68147765 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGTAAGGAGAACCTCAGCGACTGGCCCGCTTCCCAGACCTctgcagaggaggaagaggaggaggaagatgatggGGAGCCCAAGGTGTGTCAGGTGTGTGGAGATCGGGCTACAGGCTATCACTTCAACGCCATGACATGTGAGGGCTGCAAGGGATTCTTCAGGCGTGCCATGAAGCACCCCACTAAGTTCTGCTGCCCGCGGCAGGGTGTCTGTGTCATCACCAAGAACAACCGCCGCCAGTGCCAGGCCTGTCGACTCCACAAATGCCAGTCCATAGGCATGCTGAAAGAGTTGATCATGTCAAAGGAGGctgtggagaagaggaggagtcagATCAGGAGGAACAGGATGGTTGAAGAGCCCCCGGTCCTCTCGCCACAACAGGAAGCTGTCATACAGGAACTGTTCAACGCCCATGAAAAGACCTTCGACATCACCTTTTCCCACTTCCagttcaggCCCATCGACAGAGACCTCAACCCCATGTCTGTGTGGAACCAGACTGCCAGTGAGCAAAGTGTAAAACAGACTAGAAGAATGGATAACTTGTCATCATCTTACTCCACATCCACCTCCACcagcttctcctcttcctcctgttctttggaggatgaggagaaggaaGACAGGAGTGGAGGGAAGAATACGGTTTTCACCACTCTGCCCGATGTAGCTGACCTTACCACCAAcatggaggagaagaaggaggaggagaaggagaagaaggaggacaGGAGTGATGGGGGGAAGAATACGGTTTTCACCACTCTGCCCCACATAGCTGACCTCACCACCTACATGATCCAAAACATCATCAACTTTGCCAAAGGACTCCCCTccttcagGGCCCTGGCCATAGACGACCAGATCTCTCTGTTGAAGGGGGCCATGTTTGAGATGATGCAGATCCGCTTCAACATGATGTTCAATGTCAAGACGGGCATCTGGGAGTGTGGTCCCCTGACATACTGCATGGACGACGCTGTCCGGGCTGGGTTTCAGCGCCACCTGTTGGACCCTCTGATGCGGTTCCACTACACCCTGAGGAACCTACAGCTACAGGAGGTGGAGTATGTTCTCATGCAGGccatctccctcttctctccagATCGTCCGGGTGTGATCAATCATGGTGTGATTGATAGTCTGCAGGAGAAGCTGGCTATTGCGCTGAAGGTCCACATCGACTCCAAGAGGGCCAAGCCTGAGAAACACCTGCTGTACCCTAAGATTCTGGCGTGTCTGACGGAGATGAGGACTATGAATGAGGAGTATACCAAACAGGTTCTGCAGATACAGGACATCCAGCCAGGCAACTCATTTGACCCACTCATCCTAGAGGTGGTCAGCAAGGACCCCTGA

Function

GO: NA

KEGG:

id description
K08540 NR1I2, PXR; pregnane X receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328832 lncRNA downstream 34582 68093038 ~ 68093758 (-) True G289985
TU328661 lncRNA downstream 71055 68056985 ~ 68057285 (-) True G289841
TU328656 lncRNA downstream 77811 68050232 ~ 68050529 (-) True G289836
TU328655 lncRNA downstream 79686 68048367 ~ 68048654 (-) True G289835
TU328646 lncRNA downstream 89937 68038141 ~ 68038403 (-) True G289826
TU328921 lncRNA upstream 78684 68223448 ~ 68225334 (-) True G290064
TU329010 lncRNA upstream 123689 68268453 ~ 68268667 (-) True G290137
TU329017 lncRNA upstream 140389 68285153 ~ 68285759 (-) False G290144
TU329018 lncRNA upstream 140389 68285153 ~ 68285759 (-) True G290144
TU329029 lncRNA upstream 162286 68307050 ~ 68307310 (-) True G290154
XM_021597794.2 mRNA downstream 211482 67900356 ~ 67916858 (-) False LOC110520458
XM_036975012.1 mRNA downstream 246922 67870915 ~ 67881418 (-) True LOC110520455
XM_036975011.1 mRNA downstream 246926 67836705 ~ 67881414 (-) False LOC110520455
XM_036975020.1 mRNA upstream 61566 68206330 ~ 68208663 (-) False si:ch211-214p13.7
XM_036975019.1 mRNA upstream 61566 68206330 ~ 68208674 (-) False si:ch211-214p13.7
XM_021597804.2 mRNA upstream 82508 68227272 ~ 68253241 (-) False LOC110520466
XM_021597805.2 mRNA upstream 82508 68227272 ~ 68253241 (-) False LOC110520466
XM_021597806.2 mRNA upstream 82508 68227272 ~ 68253241 (-) False LOC110520466
TU328453 other downstream 242108 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 494847 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1285459 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2547845 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 2681057 65446825 ~ 65447283 (-) True G287042
TU328904 other upstream 61826 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 434339 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 481568 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 565603 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 577044 68721808 ~ 68724914 (-) True G290602

Expression Profile