RNA id: XM_021597804.2


Basic Information

Item Value
RNA id XM_021597804.2
length 4078
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC110520466
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68227272 ~ 68253241 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACATGCAAGTAATTCGCCCCAAAGCATGACGAGTGTTGGAACCATGACGTTCATACATTGAGAAAATACACATATTTCAGTTGTTGCCCAACATCCTTTCTTATGCACACTATTTGGTCCTGATTTGTAGACTCACAGATGGGCGGTGTTTCATCTGGAGCTGCTCTTTACAACCGCAATAGACAGTCTATGAAATAGATGTAAATACACGGACCATGAGAGTACAGTGATCGGGACTAGCTGCCAAAGTAACGCCCGCAAGCTACAACAGAGGAGACGTGTGTCAAGAGCAGATGTAAGATGAGGCTTGTTTAAACCACTCAAACAGTGTTCAGATCTGTAAGACTATGATGTGTGAGTCCTCCCTGGTGCGATGCCTGCAGCTGCTTGTGTCCTTACTGATGGTGGTCAGACTGCAGGGCAAGGTAACGGCCCCTGAGCGCATGGAGGCCCCAGTGGAGCTCCCCTTCACTCTGTCCTGCATGGTGTCTAAGGGGCGTGGGGACATCCTGAAACAGGTGCGCTGGCTGGATGTCCAGAACAAGACTCTGTTGACCTACGAGCCCAGCCAGAAGGACAGCGTGAGCGGCCAGCAGCATGTAGAGCTGGCACCCTCCCCCAAGGACACCTCAGCCATCACCATCCGCAGGGTGGGCTTCAGAGACGAGGGTTGCTACACCTGCATCTTTGACCTTTACCCCTCAGGATCGCAGGAGGGACGCACCTGCCTCACCGTCACATCCCGTGTGACTGCGGAGGGTAACAAGACAGCGGTGAGTGGTAAGGCGGCAGTCCTGTCTTGCTCCTATGGCCTGCCAGAGAAGGTACAGCAGGTGCTGTGgagacacacagcagagcagGGGGACTCCAGCGGAGTAGCCTCCTATGCCAAGCGCAGCGACCCCATGATCGAGCCGCCCTACCAGGAGAGGGCCTGGCtgaccccctccctctcccacagcCAGCTGTCCATCAGACCAGTCAGCATCCAGGATGAGGGCTGCTACACCTGCGAGTACCACACCTACCCAGAGCGAACCAAGAGTGCTACCGTCTGCCTCACTGTCTTTGTACTGCCTAAACCCCAGGTGAGCTACAAGAACACATCTCCAGGGGTGATCGAGGCCAACTGTACAGCCGTGTCACGGCCCCCGGTGGAGATAGTGTGGAACGCGGAGAGGGACAACCGCACTATGGGTCCCCCTGTGACATCACAGCTCCAGCAGGGGGATGGGACCACCCTGGTCATCAGCACCCTCACTGTCCAATCAGGGCTGCTGAAGGACGTGTCCGTCAAATGCCTGGTCCACCATAAGGGTCTGGAGTCACCCATCGCTGTGTCTATGAACACCAAGAttggGACAGCTCTGACCATCTTAATCTCTGTGACCACTGTAGCTGCTCTGCTGGTCATATGTCTCTGCTTCTGCCTCTGGAAGTGTTTCCTGCGCAAAGAagatgACGGAGTCTGAAAGGAGGAAGTGAAATTCAACCAATCAGAGACTGTTCCTCAACATTCTGCTGCACCTTCAGAAGTGAAGCAAGGCCCACCTCAAGAAGAGGACACACAATACAATCCATCATGACCAACATCACAGGGTCACTGAGAATCTGAATCCATCCACTCAAAACACCAATTGTTTAGTCACAATGGCTTGTACTCACCAGTTTCAAGAGTTTCAtagtaggagtgctgatataTGATCAGATTTCCCTTTCAGATCATAATAAACATGGACAGTCACATACCTGACCCTaggtcagcactcctactctgagactctttgaATACGGCCCAGAATAATCACAACACATCCTAACAGATCTGAACCTAACCTTGTCCTCTGAACCCCAATCAGCATCGATATATATCATGAGGTGTGATGCTAATTATTTGATTCTTGTAACTGCCTTGGATTCTTTGTGCTATTGTAAAGTATGTTCCCGAGATGAAAGGGACTATGTCTGTGGGAAAACCATGAAAACTCTGAATGAGAAGTGAAAATACCTTAGTCTACCAGGGTATTACAGTATTCAGTAGCCCTCACATCTTGTGATACACTGAATGCAGAAGAGATGAGTAGTTATTGTATGGGAATTTACAAACTTTAAAGTGAACCCCCCAGAATGCACTCTATTTTCATTCTATTCTCAGTGTTTCATGGGACAGCCTGCTTTGCCAAGTTATTTGCCAATTAAGTGTACATAATGTGTATGCAACTGACAGTATTTAGCTAAGCGTGATTTCTTTCTGGAAcctcctacagatgtaggattttaatttgatcacCATGTGGAGGGAGAATTTTCCTGCAGGACAATTTTCCTGCAATGTAGTGTAGTTGAGGcgtaaaaaggcttctaaagtttgtaatttccactttgaaatttcagacttgattttcccttatgaaaaattggtaacactttatttgaaacCCAGTGTCATAACAAGTTAGAACGCcatcataaccatgtcataatatgtcataacaacTGACATAACTTGTCAAAGCCTGTCATAATattgtcataacactgtcatgacccatatatttacacatgttgtgacatacagtatattgcgttattttgtgggtggttatgaCATCTACACAAATTTGTTTTTTCTTTCGTTtaaaagtttgtttcttaaatACTTTGTGGATGTTGTAATGAATTCTTTACAAGTATCATATTTCAAATAACTTCACCaccctgtgtcactttacttggactaagaaaatacactttatgacactgttaagaagcattatgaccatcataaagccagataggcctatcaggTACCTGCCCTaatgtcagtcatcagtcaaaaagagggtgtcttgtcctgctcctgaaatctgctcctgcattcatcccagtcatcagaaactgagcattggggtaggtgcatgtctgacaccAATAACAATATTCATATAACATGGTCAATAAATACAAAAATCTATAACATAAACATAGTGTTGACATGAAGTGTTTGCCCtcgtgtggtaggttttgtggggtttgacactcttatgtaggtgtcataaccagccatataataatgcaatatatgtcacaacaggtctacaTATATGTATCGTGACAGTGAtatgaccatattataacagGTTTATGACAAGTTATTTCAACTGTTGTGAAATATTAGGACATGATTATGACCGTGTCAAGTGCTACTGAAAAATAGATCATCTCCTACAAAAATGTTATATCCTACCTAATAATTCACATGTTCTGTTGCTGcagggttattttcctgctgtatcaAACTGGCTCaatttaaaatcctacatctgttgCATGCTGGCAATGATAAAGCTATCTGTAAGGGTTCAACCGCAGGTCTCAGACATAGACCACTTACTCAAAACTCTAGCAGAGTTGGCGAGAGAGTGGTAGAATATATGctcagataaaaatattttataaaattATACCATTAATGCCATTTTTATCATGGGGAGAGGGTGAATAACTGTAGTTATGagttgtttgtgagtgtgtgtgttttcagattcCATGGTCAGATGGTTTAATGTGATTCCCAGTAGAAGACGTGTATGAACATGTGCAATGGCTTTCCTTTTTAATCATTGCCACCAAGGAGTGGCCAGGCCATCAGTATTATCAGGTCTCTGCAGATTTAAGCTTCATGAAATGCTGAACCGATTTACTTAATCTGTATAGGCATCAGATAGCAGTCAAGGTTAATTGCCTTTTTAGGAGAAAACTGTCATGGTTTGCTACCATAATGCATCTTCTGTGGTACTTCTCTAATTGCGTCATCATACACAAGTTTTTTCCCCAGTATGTACATTGACTGCTGTGTTATGTGATGTAACCATTGAATATGTGTGTGGGGGGCTCTTACCAGATAACATGTGTTTCATAATGTGCCTTCTCCCAGAGTCACTTCACATGCTGAAAAAGCAACTAACCACATCAAAGGTCAACACAGCCCCCGTATGAAGGAAGATGCTGTCACTTGAAAATGTACTGTGTGATGAATACGTGATGAAATGTAAGataaaaacatttagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328921 lncRNA downstream 1938 68223448 ~ 68225334 (-) True G290064
TU328832 lncRNA downstream 133514 68093038 ~ 68093758 (-) True G289985
TU328661 lncRNA downstream 169987 68056985 ~ 68057285 (-) True G289841
TU328656 lncRNA downstream 176743 68050232 ~ 68050529 (-) True G289836
TU328655 lncRNA downstream 178618 68048367 ~ 68048654 (-) True G289835
TU329010 lncRNA upstream 15212 68268453 ~ 68268667 (-) True G290137
TU329017 lncRNA upstream 31912 68285153 ~ 68285759 (-) False G290144
TU329018 lncRNA upstream 31912 68285153 ~ 68285759 (-) True G290144
TU329029 lncRNA upstream 53809 68307050 ~ 68307310 (-) True G290154
TU329030 lncRNA upstream 54160 68307401 ~ 68307710 (-) True G290155
XM_036975019.1 mRNA downstream 18598 68206330 ~ 68208674 (-) False si:ch211-214p13.7
XM_036975020.1 mRNA downstream 18609 68206330 ~ 68208663 (-) False si:ch211-214p13.7
XM_036963363.1 mRNA downstream 79507 68125603 ~ 68147765 (-) False nr1i2
XM_036963368.1 mRNA downstream 79507 68125603 ~ 68147765 (-) False nr1i2
NM_001124672.1 mRNA downstream 82508 68128340 ~ 68144764 (-) True nr1i2
XM_021597810.2 mRNA upstream 25331 68278572 ~ 68292749 (-) False LOC110520467
XM_021597811.2 mRNA upstream 25331 68278572 ~ 68292750 (-) True LOC110520467
XM_021597813.2 mRNA upstream 202220 68455461 ~ 68460579 (-) False LOC110520470
XR_002472988.2 mRNA upstream 331231 68584472 ~ 68586742 (-) True LOC110520471
XM_021597817.2 mRNA upstream 1007262 69260503 ~ 69277276 (-) False LOC110520474
TU328904 other downstream 18877 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU328453 other downstream 341040 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 593779 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1384391 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2646777 65579791 ~ 65580495 (-) True G287112
TU329440 other upstream 325862 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 373091 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 457126 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 468567 68721808 ~ 68724914 (-) True G290602
TU329646 other upstream 593370 68846611 ~ 68850854 (-) True G290713

Expression Profile