RNA id: XM_021597811.2


Basic Information

Item Value
RNA id XM_021597811.2
length 2181
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110520467
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68278572 ~ 68292750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagagagaggggaggaatgaaATGAGAGTgtgagagcaagagcgagagagagagaaattgggaaGAAACAGAGATACCACCTTACCTTAACAAAAGAAGATCCTCCtctggactgggactgggacgaGAGACAGGAGACATGGCTGGGTACAGGCCGAGGGTGATAGTGCTGAGTAAGAAGCCAGGTCAAAGTTTTGGCTTCCTCTTGAGGGTGGAGCAAGGAGAGGATGGTCACCTGATCAGGAACCTGGAGAGGGGCAGCCCGGCCAAGCTGGTGGGTTTGAAGGACGGAGACCGCATCCTCCGGGTCAACGGGACCTATGTGGACGAGATGGACCACACacggGTAGTGGACCTGGTGAAGGAGAGTGGTACATCGGTCACCTTCCACGTTCTGGATGTGGCATCCTACAAGCAGGCTAAGACTGAGGGGGTGGACCTGTCTGACCAACACGCCACACCCACTCAGCACGCCATGAACGGGGTGGGAGGAGGGGCGCCCAAACCCAAACTCTGCTACCTGGCCAAGTCCAGCGGGGGCTACGGCTTCTCTTTGCGCTCTATCAAAGATGAGAGGGGTGACGTGGGCATGTTCATGACAGAGGTGGCTCCAGGGGGTGTGGCCGGGAGGGCAGGGGTCAAGACCAACGACCGCCTGATAGAGGTCAACGGGGAGAACACGGAGAACGCCACTCATGACCAGATAATTGAAAAGATCAAGGCATCAGGCAGCAGCGTCATGTTCCTATTGGTGGATGAGGACACAGACAGGTTCTACAAGATAAAACGCATCAGGATAGGGGCGGGGCTAGCCACAGCAAAGCTCCTCCCACTGAAGCCACGCATCGCAGACTTGGTCAAAGGATCAGACGGCTATGGATACTTCCTAAGGACTGAGCCTAACAAGACagGCCACTTCATCAGGGACATTGACAGGGGTAGCCCAGCTGAGAGGGCGGGATTAAAGGAGATGGACAGGCTGGTTGCCGTGGAGGGtgtggaagtggatggctgcagcCATGAGCAGGTGGTGGACAGGATCAGGCAGTGTGGCAGCAAGTGCTGCCTCCTGGTGGTTGATGAAGACACTGACAAGCTCTACAAGATGGGAGGCGTTTCTCCTCTGTTCTACTTGGAAGAGATTACGGAATCCCTCCTTCCAGCAACCCCTCCACCCAGCTACCCAGAGAGCGTGCCGGCCCCGGTCCCAGACCCTGTTACCACAGACCTCCTCAAGCTGTGCAAGATGGAGAAGACCTCCGCCGGGTACGGCTTCCACCTCAACGGTATACAAGGAGTCTTTGGCCAGTATGTCAAAGAGGTGGTGAAGGGTGGAGCCGCGGACAGGGCTGGTCTAGAGGACGAAGacatggtggtggaggtggacggTGTGAATGTGGAGCAGAGCAGTCACGAGCAAGTGGTGGGGTTGATCCGTAAGAGTGGCAGCTCGCTGGTACTCCTAGTTGCCGGGAAGCAGGCCAACGACCACTTCAAAGCCAAAGGGGTGGCCATCACTCCTCAGCTCTTCATCCCCTCGTCCCAAGCCAGGTCCCCATCCCCAGCCCCGTCCCCGTCCCTAGCACGAAGCCACACACCAGCCCAGATAGACACTCCAGCCACTCTGGAGGAGGtccaagaggaggaagaggaggaggctgCTGAGCCAGACACCACGCCGCACCAGGAACGAGAGAGGaCTCCATCTGTGTCATCAGCAGCATCATCTTGCTCAAGCGTTGATGAGAGACTCTGAGAAGTCACCAATGAGAAATCATTTCCTGTCAAGACTTTTTCTGTCTCCCGTCAGCCTTTGCACCATGCTGGATAATGCAGGTATCTCTGCTCAAGAACTCTGATCAAACTTAATACATTTCTATGACAGACGCTGGTTTTAGGTATCAATGCAAATCGGTTGAAAATAGCAATAAATAGCCATTAATGTATTGATCAGTTAGATAGCACTGTCGTCCAACCAGCGTATGGATCAGTATAATCTCATTACGAACACCTGCAATGTAGACCGAGAACACTAGTAATGCCAGTTCAATGTGTTTAACTGGAACAGTAACCATAGTGAGAGAGGCCTACTGTACTACACCTTAATAATAATGCTGTCTTTTAAATATCATTAAAAGgatcaaatacatttgatttgttttacccAAAGA

Function

GO: NA

KEGG:

id description
K24057 PDZK1, PDZD1; DZ domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329010 lncRNA downstream 9905 68268453 ~ 68268667 (-) True G290137
TU328921 lncRNA downstream 53238 68223448 ~ 68225334 (-) True G290064
TU328832 lncRNA downstream 184814 68093038 ~ 68093758 (-) True G289985
TU328661 lncRNA downstream 221287 68056985 ~ 68057285 (-) True G289841
TU328656 lncRNA downstream 228043 68050232 ~ 68050529 (-) True G289836
TU329029 lncRNA upstream 14300 68307050 ~ 68307310 (-) True G290154
TU329030 lncRNA upstream 14651 68307401 ~ 68307710 (-) True G290155
TU329038 lncRNA upstream 25523 68318273 ~ 68318828 (-) True G290163
TU329068 lncRNA upstream 72790 68365540 ~ 68366876 (-) True G290190
TU329067 lncRNA upstream 75394 68368144 ~ 68370857 (-) True G290189
XM_021597804.2 mRNA downstream 25331 68227272 ~ 68253241 (-) False LOC110520466
XM_021597805.2 mRNA downstream 25331 68227272 ~ 68253241 (-) False LOC110520466
XM_021597806.2 mRNA downstream 25331 68227272 ~ 68253241 (-) False LOC110520466
XM_021597808.2 mRNA downstream 25331 68227272 ~ 68253241 (-) True LOC110520466
XM_036975019.1 mRNA downstream 69898 68206330 ~ 68208674 (-) False si:ch211-214p13.7
XM_021597813.2 mRNA upstream 162711 68455461 ~ 68460579 (-) False LOC110520470
XR_002472988.2 mRNA upstream 291722 68584472 ~ 68586742 (-) True LOC110520471
XM_021597817.2 mRNA upstream 967753 69260503 ~ 69277276 (-) False LOC110520474
XM_036975027.1 mRNA upstream 1087717 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 1303087 69595837 ~ 69614655 (-) True LOC110520477
TU328904 other downstream 70177 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU328453 other downstream 392340 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 645079 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1435691 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2698077 65579791 ~ 65580495 (-) True G287112
TU329440 other upstream 286353 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 333582 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 417617 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 429058 68721808 ~ 68724914 (-) True G290602
TU329646 other upstream 553861 68846611 ~ 68850854 (-) True G290713

Expression Profile