RNA id: XR_002472988.2


Basic Information

Item Value
RNA id XR_002472988.2
length 1495
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110520471
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68584472 ~ 68586742 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agattggttctcaattagaggcagctgtttatcgttgtctctgattgggaaccatatttaggcagccatcttctttgggcatttcgtgggttattgtctatgtgtagttgcctgtacTCGGTGTCATAGCGTCACGGtctgttgtttttgtttaatgcaatagaatcctactctaATGCTCTATATTGCAcagttagttttgcatactaatAAGTCTTACATAGTTTGTTTTGGTATGTAACATTGAAAGTGGCACATTTTTCTCTAACTGAAACAATTCCTAAAGTAGAGCGAAATCTTAATTGTTTTAACTAAAGGGAAAAACTGCTCTTCTGcattggctgattttccttcttCTCAGCAGTCAGGGGAGCTACACGCCCACTGGTTAACGAGGAAATACTTTATTTATATTGTACGGGATGCTTGTCAAATAGATACATTGCCCTTCGTCTGTTCAAAAAGGACCAAGTTGTTGCGATCACAATACCAACCAGAGGGCAAAAATATCTTGAAAGACTGGTTGCGAGCAGCTTTTAGTGAGTGGTAATGAGGTGACCAATAGTGGTTGCAATTGAGATCAGCTATGCAGGTGAATTTATGCTTATTAATGGTTTAACGAGACAGCAGCTGGCGATAATAAGGATGCTGCCTTTTGAAGCAGAATTTCTAGGgtggggtagggatgtcccaaggctACCAGACAGCACGGACCTAATTTATCGTTAGGACCTCAACATTGGCGTGTCACTATCCCACAACACCTTGTGGCGCAGCGAACAATTTCTGAATTAATGGCAGACAGAAGTCCTCGCTTGGGATACCATTTTCCAGAAGAATAAGGAATAACTTCATGAAATGTTGACGGACATCCCACCCTGACACCCTGCAGATGTAAATAACTTGGTGTTAACCTCCCAGGCACCAGGAAATCACCATATCCAAGGATATTATTCAGAACACCACAATGTTAGATAGAAATAGATTTGATTATCATGCAAATTTGTTAGGACATTGTAATGTATGATGTGCATTCTAAAATGGAGATGTGATTTCTGTCCCAGGGAATAGCATTGTGTGCAACTTTTCAATTCGGATCACAATTAGTTGAATTAGGTGTTACTGAAGGGCTGGAACAAAAACTTAGGACTTATGCACAGATACAGGAAAACTTGTTAAGATTATTCTAAATTGTAAGTGTTGATGTCTCCACGTTTCTGGTTTTGAGGCTTGGGCATCTAGTAtctgcagttcatctgtctaatcccctgcaaggagagagaaaggcttCAATACTATTACAATGCTCTATTCATTTGATTGAAAGTATTCATGTTTTATATGCATTCATATCATTTTATTAGATATATTATCCTTCATCAAATGCCAGTATTTGTTTTGTATCCAAAGCATCTAGTTTATATTAGGATGAAGTAGCCTAGGCCTCTAATCTAGTTAGATTGCATCATATCACTTTTCAATAAATATCAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329434 lncRNA downstream 11163 68573110 ~ 68573309 (-) True G290539
TU329429 lncRNA downstream 28370 68555217 ~ 68556102 (-) True G290534
TU329421 lncRNA downstream 44675 68539416 ~ 68539797 (-) True G290526
TU329415 lncRNA downstream 56284 68527933 ~ 68528188 (-) True G290520
TU329414 lncRNA downstream 56963 68527281 ~ 68527509 (-) True G290519
TU329514 lncRNA upstream 124271 68711013 ~ 68715853 (-) True G290597
TU329516 lncRNA upstream 136157 68722899 ~ 68727546 (-) True G290599
TU329541 lncRNA upstream 168668 68755410 ~ 68755852 (-) True G290623
TU329591 lncRNA upstream 227744 68814486 ~ 68814889 (-) True G290672
TU329592 lncRNA upstream 228270 68815012 ~ 68815236 (-) True G290673
XM_021597813.2 mRNA downstream 123893 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 291722 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 291723 68278572 ~ 68292749 (-) False LOC110520467
XM_021597805.2 mRNA downstream 331231 68227272 ~ 68253241 (-) False LOC110520466
XM_021597817.2 mRNA upstream 673761 69260503 ~ 69277276 (-) False LOC110520474
XM_036975027.1 mRNA upstream 793725 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 1009095 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 1054524 69641266 ~ 69644739 (-) False LOC110520480
XM_021597828.2 mRNA upstream 1062795 69649537 ~ 69675010 (-) False ankrd10b
TU329440 other downstream 3765 68579103 ~ 68580707 (-) True G290542
TU328904 other downstream 376077 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU328453 other downstream 698240 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 950979 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1741591 66842671 ~ 66842881 (-) True G288578
TU329467 other upstream 39590 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 123625 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 135066 68721808 ~ 68724914 (-) True G290602
TU329646 other upstream 259869 68846611 ~ 68850854 (-) True G290713
TU330123 other upstream 669263 69256005 ~ 69256544 (-) True G291138

Expression Profile