RNA id: TU330111


Basic Information

Item Value
RNA id TU330111
length 2685
lncRNA type sense_over
GC content 0.41
exon number 2
gene id LOC110520474
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69260503 ~ 69277276 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGGGCCGGGGTCTTGCACCTGCCCCTCCCAGCAGTGCTCACTGGTTATCTGGCCCTTCAGAGGCAATGACTGAGCACCAtctgcgtgagagagagaggctgaaaacaaatccaattttgataaactcccatatctattgggtgaaataccacagtgagcaatcacagcagcaagatttgtgacccgtttccacaagaaaagggcaaccagtgaagaacaaacaccattACTGAAATCTGATGGGACCACCCCCCCTCCtataccccctctttctctctctctttctctctctttctttctctcctctctctctctctctctcctggctgtGAACGATGGATAACGCTGCAGCCTAGTGACGAGGTCGCCACGCCAACAGCTGGACCATGTGCTGCAGTAGACAAACTTTAACCTCCACCATCCCCTCCCCTAGGGGTCAACAAGGCCGCCGTCGTCACGACAATGTGGACACTTGATCCCCCAAGTCTCCTATCTTCACTCCCCCCTCTCGGCACCCAGACATTGAGGGGCCGTCGCTGCTGCTATCTAGACAAATAAAAAGAATGTTTCGTCAAAGATTATCTATGTACATTCAAAGTTACTTCTGCAaaatgatattattattattgttcttattattattattattccactGGTTATCGTTTGGCTTTGGCTGACAGGGCCAGTTAACCTCACCTTGAACCAAACCTCAAGATATGCGAAACACACGTTATACATACTTacacatgtttatttatttatatgtgtGCACTTagtggtgcatgtgtgtgtgtgtggatgtgtacaCTGAATTTGTACTGAAGAGAGGTGGCATTTTCAAATATATTCAACAACGTAGTGAGTTAGCAGTTGCTTAAAACCCCTACCTCAGAGCAAACCAGGTTAGTACTTATTTACACACCAGAAATATATATCgagatatatttatttattttcagagGTGAATGTTTTTATGAACACCAATCCAAAGCCTTACTACTCTCCTGTCCGCAGTTTCTGATGGACGTTTAGTTTGGACCTATAAACACGCAGAAAATCAAAGACTTAAACCCATTGCCATGGAGACGGAATGCTTGTCTGAGCAGCCGGAGAGGAAGAAATGTCTGTCTGACCTCTTTTCCTCTGCAATCAAAGATTATTGAGATTATTACAGTTCGTTCACATATAGTTACTATATATTAATATGCCATAGTAATATATTTATCATTGCATACAAAGCTTACGAGAAGAAGCTGTTCGGCATTATTCAACACGCAAGTAAAAGCCAGGAGAATGGGATCCAGGAGGAGTTTTCTAGAGTAGGACActcatcatcatcacacacacacatcatcatcatcacacacatCCGCATGTCCCAGTTTCACCTGGGCTGGTGGTCTGTTGTTAATGCCTACACCATCATTGAGACAAAGCCTTGATATACTTTAACAGATTACCTAGTTCACTCACAATGACCCACCTGTGACACGTTATTCTCACCTGATGCCTCAGCACGGCGCCCGTGGTTAGCTGTGATAGGCTATTTGGCACAGAGGTGTGCTGTTATTGGGCTGTGATTGGGCTGGGCAGACTCATGACTGGTTTTCAGAGAGGTTTTGACATGCCTGAAGCCATGGCTGCTGCTTTGGGCTGTGAGacagtaaggaaggaggaaacaCACCAGAGCTGACGCTGCACGGTCTTGCACTTACAAACTGCCTAGATTGTAAACACAAGACACTTGAATGTAGTCTATTCCATGTTCTCCTCTTGGGGAACGTAACCACCTTGACAACGAGAAGAAATACCACAACAATAACATCTACGACAACTGCTACAACATGCAGAATAAGACAAAAGAAACAGGCAAAAACGTAAGGACGAAGAGTGTAGCTTACTTTGTCAGTTCATTGGTACTCAACGTTCGCCTATATACTGTAAAAATGTACAAATACAGAGAATAGAATTGAGCGCAAGCTGAACCTTTTGTTTGAGAGAAATTTTAAGTTAAAGATGATACATTATGTTTGTACTGTTTATGTGTTTGGAGTGAATTCCCGGAAACAATGAAAGCACTAATTATTAAGTTATATACAAGCAGCAATGTTTGGCCTGGATTTTAAAATGATTATTACAGGATGGTCTTGTGAAATGATTGCCTCTACAAGGACATTTTCTAATGCTGTAATTCCGAGAAATACTTTGAGAACAAATGATTCATTGATACTTGACATACACGTTTATTCTTGCTACTTAGGTACATTTCACGAATGGCACATGCAATATTTACATTTTTAAGAAATTTGTTTATAGAGAGGTACCAACTGTATAATAATATGTTAATAATGTTTGTTAAACcttaaaatatattatttttttgctCTTTGTAATTTTTTTCTGCCAATTGATATAATGGAAAGTGTTCTGTTTGTTTTTGCTAATAGAGCGTATTGGTGATTTGaccagtgtttttttttgcatttgcaTAGCGTTCCTGTTGGGTTTTTATTTAGCGTCTAAACATTACGATGATATGACGACCTAGCTTAACTTGCTGTGTCTTCCATTGTAAATACTTCATATCTCTTATTGAGATGCTACTAAGAGATGATCATTTAAACCTAGTGTAGTTGCCATGGCTTTAGACTGTATTGATTCTTTATAGACACTTGCAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330124 lncRNA downstream 2239 69258051 ~ 69258284 (-) True G291139
TU330122 lncRNA downstream 4631 69255460 ~ 69255892 (-) True G291137
TU330080 lncRNA downstream 56555 69174337 ~ 69203968 (-) True G291098
TU330075 lncRNA downstream 100141 69160171 ~ 69160382 (-) True G291093
TU330069 lncRNA downstream 107103 69153212 ~ 69153420 (-) True G291087
TU330133 lncRNA upstream 16553 69285737 ~ 69286060 (-) True G291148
TU330585 lncRNA upstream 30694 69299878 ~ 69300091 (-) True G291546
TU330588 lncRNA upstream 37243 69306427 ~ 69306636 (-) True G291549
TU330599 lncRNA upstream 55163 69324347 ~ 69325120 (-) True G291560
TU330613 lncRNA upstream 75818 69345002 ~ 69351042 (-) True G291572
XR_002472988.2 mRNA downstream 673781 68584472 ~ 68586742 (-) True LOC110520471
XM_021597813.2 mRNA downstream 799944 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 967773 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 967774 68278572 ~ 68292749 (-) False LOC110520467
XM_021597808.2 mRNA downstream 1007282 68227272 ~ 68253241 (-) True LOC110520466
XM_036975027.1 mRNA upstream 111283 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 326653 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 372082 69641266 ~ 69644739 (-) False LOC110520480
XM_021597828.2 mRNA upstream 380353 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA upstream 383349 69652533 ~ 69675008 (-) True ankrd10b
TU330123 other downstream 3979 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 409669 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 535609 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 543138 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 612903 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 711162 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 838356 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1450852 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1758435 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2634130 71903314 ~ 71903908 (-) True G293984

Expression Profile