RNA id: XM_021597827.2


Basic Information

Item Value
RNA id XM_021597827.2
length 1328
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC110520480
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69641214 ~ 69644739 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGCCTAATAAACCACGCACTAGCGGCTAGGGTAGGAGGATAGGATTTCAGAGGCGACAGCGAAAAAGGAACTGAATGTTGTTGTAAACACAACATTAACCAGTTAGCtatattataaatacatttaGTGTAAACAAAACAGTACATTTATTTGTATTACCTTTATATAGATTTAGTTTACGATGTCTACTCCTGCAAGAAGACGGCTGATGAGAGATTTTAAGCGGCTACAAGAAGACCCTCCGGCTGGTGTCAGTGGTGCCCCTTCCGAAAACAACATCATGGTGTGGAATGCAGTCATATTCGGCCCAGAAGGGACACCTTTTGAGGATGGCACATTTAAGCTCACTGTTGAGTTCACAGAAGAATACCCCAACAAACCCCCCACAGTGCGATTTGTGTCAAAGATGTTTCATCCAAATGTGTATGCAGATGGGAGTATATGCCTGGACATTCTACAGAATCGATGGAGTCCAACCTATGACGTATCATCAATTCTTACCTCAATCCAGTCCCTGCTAGACGAACCAAACCCCAACAGTCCGGCCAACAGTCAAGCGGCCCAGCTTTACCAGGAAAACAAGAGGGAGTACGAGAAGCGTGTGTCGGCCATTGTAGAACAAAGCTGGAGGGACAGTTGACCAGACCCTCtcccttctgtcctcctctgtccccAGCACTGCGCTGTGTGACTCGAGTTCTAGTGGAGTACATCTTCATTTAGTTTTTCTTTTTAAGCTTTTATGCACTTTACCTCTCCCTTCCCTTGTAGAACCTCTTTTTTTCTGACACGCTTGGAGTGAttgttaattttatttttttccccctctcattTTGGCCTATCGGGACGTATGTGCTGAATCTTGCCTTTGCCACTACGCTCTTCAATTGAGGACCATTTTTGGATATCAATTACCTTGCCTCATCCCTTTACTGAAACAAATGAGTTGGACTAATGTTTAAAGTTTGGAAGAAATATCAATTATGATAACCTAGCTTGTAGGTTCCTTCTTTGGTGTGCTCCCCTTACTTTATATCAAGCTAATTTTACAAAGCAGCATCTGAGCTATCAAGCTCTACCTTTCTTTGGACAATTGCTGCCCGTGTTCATCCTAAACACCCTGATTGAGAATCAGACCCACAAGCTTAACCCATGTCTTTGCTGTGTTGTGAGCTCTGTTACATGCATGACAGTGAGTGCATTTGTTGTTCAGTACCCTCAATGTATATAGGAAAACATACATCTGGATTTATGTACAGATTTTGCACTGGTTGTTCATGTCATTTTTTCCAGCACTTGTAAATAAAGGCAAAACTACCTTTACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330709 lncRNA downstream 572 69639833 ~ 69640694 (-) True G291662
TU330697 lncRNA downstream 41557 69522755 ~ 69599709 (-) True G291652
TU330708 lncRNA downstream 47188 69591159 ~ 69594078 (-) True G291661
TU330675 lncRNA downstream 133319 69499580 ~ 69507947 (-) False G291631
TU330676 lncRNA downstream 133319 69501096 ~ 69507947 (-) True G291631
TU330812 lncRNA upstream 69491 69714230 ~ 69714857 (-) False G291749
TU330813 lncRNA upstream 69491 69714230 ~ 69716414 (-) True G291749
TU330820 lncRNA upstream 83494 69728233 ~ 69729053 (-) True G291755
TU330827 lncRNA upstream 88581 69733320 ~ 69733532 (-) True G291760
TU330830 lncRNA upstream 93770 69738509 ~ 69738762 (-) True G291763
XM_021597820.2 mRNA downstream 26611 69595837 ~ 69614655 (-) True LOC110520477
XM_036975027.1 mRNA downstream 171568 69380467 ~ 69469698 (-) True LOC110520476
XM_021597817.2 mRNA downstream 363990 69260503 ~ 69277276 (-) False LOC110520474
XR_002472988.2 mRNA downstream 1054524 68584472 ~ 68586742 (-) True LOC110520471
XM_021597813.2 mRNA downstream 1180687 68455461 ~ 68460579 (-) False LOC110520470
XM_021597828.2 mRNA upstream 4798 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA upstream 7794 69652533 ~ 69675008 (-) True ankrd10b
XM_036975031.1 mRNA upstream 53726 69698465 ~ 69709126 (-) False otc
XM_036975032.1 mRNA upstream 53820 69698559 ~ 69709169 (-) True otc
XM_036975037.1 mRNA upstream 130893 69775632 ~ 69814808 (-) False sytl5
TU330123 other downstream 384722 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 790412 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 916352 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 923881 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 993646 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 335607 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 462801 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1075297 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1382880 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2258575 71903314 ~ 71903908 (-) True G293984

Expression Profile