RNA id: XM_021583357.2


Basic Information

Item Value
RNA id XM_021583357.2
length 858
RNA type mRNA
GC content 0.53
exon number 7
gene id LOC110504590
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69907305 ~ 69911161 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGTATTAGCACCACGGACAGCAACTGGCCGCTTACCAAATTTCGGAACCTGTTGAAGATATGCTCACCCATCAATTTCTTGGAGTGCGGCTCTGACGAGCTGTTCGTGGGGCGGGCGGGGTACCTGTGCGCTGACCTGGTGGTGAAACAGAAACTGGGGATTGAGATTCTTAGCAAGGATCAGATCCAGGCCATTTGCCAGGTTATTATAGAGTCTGGTAAACAGTATGCCACGAGGAAGAGAAAACCCTATCCTCTCATGTACTCCTACTATGGGACTGAGTATTTGgGTGCAGCCCATGGCCTGTCGTCGGTGCTGCAGATGTTGCTGTGTTACCAGGAGGTGCTGAATGGAGGGGACAGGGATCTGGTCGGGCAGATTGTGGACTTCCTCATGAACTAGGAGCAGAACGGTAACTGGCCGGCCGAGCTGGGAgccatgacagagagggagaatgagctGGTGCACTGGTGCCATGGTGCGCCAGGTGTAGCCTACCTCTTTGACAAAGCCTACCTGATCAATAGGAAGCCCCAGTACCTGGACACATGCATCCGCAGTGGGGAGCAGGTGTGGCTGAAGGGCCTGCTGAAGAAAGGTCCAGGGATCTGCCATGGAATGGCAGGCAGCGCCTATGTCTTCATGTTACTGTACTGCCTCACAGGGAACTCCAAATtcctcttttctccccacAGGTTTGCAGAGTTCCTGTTTACGGAAGAGTTCAAGGTGGGCTCCTGCTCAGTCACCAGTGTTTATAGTCTGTTTGAGGGCCTGTCTGGAGCCGTTTGCTTCTTGGTTGACCTCCTTCAGCCCGACCAATCAGAGTTCCCACtcttcagtgtgtttgtgtga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330930 lncRNA downstream 12262 69893326 ~ 69895043 (-) False LOC110520487
TU330927 lncRNA downstream 12262 69893367 ~ 69895043 (-) False LOC110520487
TU330924 lncRNA downstream 12262 69893580 ~ 69895043 (-) False LOC110520487
TU330926 lncRNA downstream 12262 69893580 ~ 69895043 (-) True LOC110520487
TU330923 lncRNA downstream 12656 69892994 ~ 69894649 (-) False LOC110520487
TU330957 lncRNA upstream 22698 69933859 ~ 69935242 (-) True piga
TU330993 lncRNA upstream 60500 69971661 ~ 69971925 (-) True G291896
TU330976 lncRNA upstream 119603 70030764 ~ 70034763 (-) False G291884
TU330977 lncRNA upstream 119603 70030764 ~ 70034763 (-) False G291884
TU330978 lncRNA upstream 119603 70030764 ~ 70034763 (-) False G291884
XM_021597838.2 mRNA downstream 3450 69875922 ~ 69903855 (-) False xk
XM_036975042.1 mRNA downstream 12174 69892951 ~ 69895131 (-) False LOC110520487
XM_036975043.1 mRNA downstream 12174 69892951 ~ 69895131 (-) False LOC110520487
XM_036975035.1 mRNA downstream 46304 69775632 ~ 69861001 (-) True sytl5
XM_036975034.1 mRNA downstream 46305 69775632 ~ 69861000 (-) False sytl5
XM_021597848.2 mRNA upstream 16500 69927661 ~ 69933360 (-) True asb11
XM_036975044.1 mRNA upstream 22536 69933697 ~ 69938854 (-) False piga
XM_021597845.2 mRNA upstream 22536 69933697 ~ 69938856 (-) False piga
XM_036975045.1 mRNA upstream 22536 69933697 ~ 69938856 (-) False piga
XM_021597850.2 mRNA upstream 38504 69949665 ~ 69971171 (-) False LOC110520490
TU330123 other downstream 650761 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1056451 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1182391 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1189920 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1259685 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 69185 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 196379 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 808875 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1116458 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1992153 71903314 ~ 71903908 (-) True G293984

Expression Profile