RNA id: XM_021597857.2


Basic Information

Item Value
RNA id XM_021597857.2
length 1974
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110520492
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70035040 ~ 70048393 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATATGTCTAAAAAAGCAAGCTAGTCCCCGCCCCCTGTCTTGTTGTCCAAAAACTTGCATGAAATCGATTTGAGTGGAAAGGCTAGCTTGCTATTCTACATTGACTCATATATCAAGTCCACAATCTTGGGAGTGTACATTTTAAGAGGTTGAATCTTGGGGTACAGCAATGTCTAAAAGTGAGACAGAGGAGATGATAGAGATTGAGATCGACGGACAGGAGAAACAGGAGTGCCTGGAGGAGGGGGTTGAGGAGCAGACCATTACATCAGCCGATCTGATCCAACAGGACATCGACATCAATGAGCCAATCGGTAACCTGAAGAAGCTCCTGGAGCCCCGTATCCAGATGTCATTGGATGGATATGAAATCTGTTTACAGGACATCCAGcTGCATCCAGACCACAGCCTCTTTGATCAAGGAGTGAAGACAGACGGCACAGTGCAACTCAGTCTACAGATCATCACAAAGCCAGGCGAGGAGAAGCTGAACATTTTGGAGATCGTGAAGCCGGTGGAGACGGTGGAGGTGGTGATAGACCCGGATGCGGCAGGGGAGGAGGGCACCCTGATGGAGGAGGGCCAGCTGATTGCTGTGGAGCACTCCTCCCTGTCAGATGACACCTCGGAGCAGGTGACACGCTGGGCCGCCGCCCTGGAGGGCTACCGCAAGGAACAGGTCCGTCTGGGGATACCCTACGacCCAGAACAGTGGACGGCGGACCAGGTGATCCACTGGGCCGTGTGGGTGATGAAGGAGTTCAGCATTGACGAGATGGAGGTGGGAGGGATTCACATCCCGGGTCACGACCTCTGCTCCTTCACCCAGGAAGAGTTCCTGCAGAGGGTCCCCAGTGGAGAGATCCTTTGGAGCCACTTAGAGCTGCTCCGCAAGTATGTGTTGGCCAGTCAGGACCAGTCTGGCCAGGAGGCCACAGTCACCATTGACCAACAAGTCCAGATCATCCCAGCTGCCGTGCAGACCACACCCACTACTATCAAGGTACTGAAGCAGAACCGCGGCCCCAGAACACCCCGCAtctcaggaggagaggagcgcaGCTCACCTGGCAACCGCACAGGTAACAACGGTCAGATCCAGCTGTGGCAGTTCCTGTTGGAGCTGTTGACGGATAAGGATGCTAGAGACTGTATCTCctgggtgggagaggagggagagttcaAACTCAACCAGCCTGAACTGGTGGCCCAAAAATGGGGTCAACGCAAGAACAAGCCCACCATGAACTATGAGAAACTCAGCCGAGCGCTCAGGTATTACTACGACGGGGACATGATCAGCAAGGTGCAGGGCAAGCGCTTCGTCTACAAGTTTGTGTGCGACCTGAGGACTTTGATTGGCTACAGCGCTGCTGAGCTCAACAACCTGGTGACGGAGTGTGAGCAGAAGAAGCTGGCCCGCATTCAGCTGCATGGGATTGGCCAGCCCATCACCACGGTGACACTGGCCACCTCAGCACAGGACAGCTGAGGGGGAGGGGCATGGGGATCCATGACTGCCCCAGGTAGAAGTTGCCCACTGTGACCAGCCCTAAGTGTTACATTAATAGGTGGAAATGATGAACAGACTTTAGATCCATGTCTATGGGCAACTTCGTCCTTCTCCTTTGATTGGGGAGGTTGTTTTCTTATTTTAACCAGGGAAGAGATGCTTGTTGGAgggagtgtatatgtgtgtgtgtgtatatgagtgtctgAGAGGTGGAGTGTGTTTGCGTATGCTGGAAAATCAAATGAGCTTTGCATTTTTTGTTCCTTTATCTGTAGCTTAGTATAGTTTCCATTGTAAATACCGGTACTCCATGTTTTTGATAGCCACAAGGGCAGTGTATTTTCATATTTTCCATTTATAAAAGGAtcagttttgtattttatttgaggCTTTTTTTCCTCCTAATGAGTTGGACCTTGATCGTCCACCAGGGGAAATAAAGTGGCAGATGTTTTCCTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09441 GABPA; GA-binding protein transcription factor, alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330976 lncRNA downstream 277 70030764 ~ 70034763 (-) False G291884
TU330977 lncRNA downstream 277 70030764 ~ 70034763 (-) False G291884
TU330978 lncRNA downstream 277 70030764 ~ 70034763 (-) False G291884
TU330979 lncRNA downstream 277 70030764 ~ 70034763 (-) True G291884
TU330993 lncRNA downstream 63115 69971661 ~ 69971925 (-) True G291896
TU331354 lncRNA upstream 72015 70120408 ~ 70120729 (-) True G292214
TU331351 lncRNA upstream 74466 70122859 ~ 70164009 (-) True G292211
TU331355 lncRNA upstream 80188 70128581 ~ 70129124 (-) True G292215
TU331398 lncRNA upstream 161174 70209567 ~ 70210180 (-) True G292252
TU331402 lncRNA upstream 167006 70215399 ~ 70215747 (-) True G292256
XM_021597853.2 mRNA downstream 63867 69949665 ~ 69971173 (-) True LOC110520490
XM_021597849.2 mRNA downstream 63868 69949665 ~ 69971172 (-) False LOC110520490
XM_021597850.2 mRNA downstream 63869 69949665 ~ 69971171 (-) False LOC110520490
XM_021597851.2 mRNA downstream 63869 69949665 ~ 69971171 (-) False LOC110520490
XM_036975045.1 mRNA downstream 96184 69933697 ~ 69938856 (-) False piga
XM_036975048.1 mRNA upstream 76905 70125298 ~ 70135532 (-) True LOC110520496
LOC118964359 mRNA upstream 171937 70220330 ~ 70220464 (-) True LOC118964359
XM_021597886.2 mRNA upstream 722763 70771156 ~ 70806536 (-) False LOC110520510
XM_036975066.1 mRNA upstream 722763 70771156 ~ 70806539 (-) False LOC110520510
XM_036975067.1 mRNA upstream 722763 70771156 ~ 70806540 (-) True LOC110520510
TU330998 other downstream 38435 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 778496 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1184186 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1310126 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1317655 68710367 ~ 68717385 (-) True G290598
TU331092 other upstream 59147 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 671643 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 979226 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1854921 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 2124656 72173049 ~ 72206798 (-) True LOC110504660

Expression Profile