RNA id: LOC118964359


Basic Information

Item Value
RNA id LOC118964359
length 135
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC118964359
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70220330 ~ 70220464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACTTACCTGGCAAAGGAGATAATGTGATCAGCAAGGCGGTTCTCCCAGCGCAAGGCTCAGCTAATGTATTCAAAATGTGAAAAGAGTGACTGCATAAATtttggtagtgggggactgcgttcgtTCTCTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU331402 lncRNA downstream 4583 70215399 ~ 70215747 (-) True G292256
TU331398 lncRNA downstream 10150 70209567 ~ 70210180 (-) True G292252
TU331351 lncRNA downstream 56321 70122859 ~ 70164009 (-) True G292211
TU331355 lncRNA downstream 91206 70128581 ~ 70129124 (-) True G292215
TU331354 lncRNA downstream 99601 70120408 ~ 70120729 (-) True G292214
TU331428 lncRNA upstream 23405 70243869 ~ 70252589 (-) True G292272
TU331431 lncRNA upstream 27721 70248185 ~ 70248966 (-) True G292274
TU331434 lncRNA upstream 63192 70283656 ~ 70284013 (-) False G292277
TU331435 lncRNA upstream 63192 70283656 ~ 70284188 (-) True G292277
TU331444 lncRNA upstream 76011 70296475 ~ 70296816 (-) True G292286
XM_036975048.1 mRNA downstream 84798 70125298 ~ 70135532 (-) True LOC110520496
XM_021597857.2 mRNA downstream 171937 70035040 ~ 70048393 (-) True LOC110520492
XM_021597856.2 mRNA downstream 171947 70035040 ~ 70048383 (-) False LOC110520492
XM_021597858.2 mRNA downstream 171947 70035040 ~ 70048383 (-) False LOC110520492
XM_021597853.2 mRNA downstream 249157 69949665 ~ 69971173 (-) True LOC110520490
XM_021597886.2 mRNA upstream 550692 70771156 ~ 70806536 (-) False LOC110520510
XM_036975066.1 mRNA upstream 550692 70771156 ~ 70806539 (-) False LOC110520510
XM_036975067.1 mRNA upstream 550692 70771156 ~ 70806540 (-) True LOC110520510
XM_021597888.2 mRNA upstream 586885 70807349 ~ 70810049 (-) True jagn1a
XM_021597890.2 mRNA upstream 590140 70810604 ~ 70837491 (-) True LOC110520512
TU331092 other downstream 112380 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 223725 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 963786 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1369476 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1495416 68721808 ~ 68724914 (-) True G290602
TU332000 other upstream 499572 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 807155 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1682850 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1952585 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 2350785 72571249 ~ 72575432 (-) True G294451

Expression Profile