RNA id: XM_021597888.2


Basic Information

Item Value
RNA id XM_021597888.2
length 1851
RNA type mRNA
GC content 0.46
exon number 3
gene id jagn1a
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70807349 ~ 70810049 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGAAGGATGTTGAGAGAAAATGGGATGCTGCGACTGATGTGATGCGCGTGCGCAGTGCGCACAACGCATGTGTCTTGTCCTCTATTCAGCCGGCTTCTATCTATTCATCCAGCTTCTATTCATCTTGGCATTTAGGCATATGTAGGTACTGTAGTAGCTCGCTAACTACGTTCATTCAGCATCTCAGTAACAAACGGTTGTTACCATGACGTCTCGTGTGGGCCCTCGAGCTGCAGGTACTGATGGGAGTGACTTCAAACACAGAGAGAAGGTGGCCTCACACTACCAGATGAGCGCCTCGCTAAAGTCTGAGATCCGGAAACTCAACTTTGTCCACCTGCTGCTCTGGCTCCTGGTGGCGGCCCAGGtgatcgtcagcaaacttgaccTGGTGCCAAGCGATAAAGTGGCTGAGCCCTACAGATGGGAGTACCCCTACCTGATCAGTCTCTTTCCACTGGTCACCGGCAGCCTGTCACTGCCCAAGAACAACATCAGCTACCTGGTGATCTCCATGATCAGCTCAGGCCTGTTCTCCATCGCTCCACTCTTCTACGGCTCCATGGAGATGCTCGGCGAGGCCCAGCAGCTGTACCGCCACGGCAAGGCTTACCGCTTCATCTTTGGCTGGGCGGCGGTCACCGTCATGTACCTGGTGATGGTGGTGGCGGTGCAGGTGCACGCCTGGCAGATCTACTACAGCAAGAAGCTGCTGGACGCCTGGTTCGACTCCAcacaggagaagaagaagaagtgatgAGGATGTTTTGTGGGTTTTGAGGCTAGGGGAAAACTGtttgtgtttttctctctgtctttaggATGCATATATTAGTAtattctgttatttatttattacctCATGCAATCACTGGCTATTATGTCTTTCCAGATGGTCTATCCAACACACATTTTCTCGCCAAAACacgcatactctctctctccatttcaaaGACACTCAGGTGTATACATTTTCTCTCACATACACAAACAattagtggcgcagcggtctaaggcactgcacctcagtgctagaggtgtcactacagacccagcatcgttagggtttggctggggtaggccgtcattgtaaataagaatttgttcttaaccgacttgcctagttaaataaaataaatgaaaataaaagcAATTCTCTACTTTGTTTATCTGGCCTCAGAGAATAAACGATAGAGACTGCAGCTCCTTCTGAGACCACAATATTTACAGCTGTTGTGAAGCATTTAGACGTATGAACCAAGCCCTTGTGTGAGACTGCAGCATGACGGAGGATCTCTACTGACTCTTTGTCTTAACAGTGGAGGAATGAGGGCTGGACAAGTTTGTTGTCACGGTTTCAGTAAATTGACATCCGCCGACTAGTCTGTCAATATTGAAAGCCCTGTAAGGCATGCGCTCAAGTACTGTGTAAAGCTTGAGACTGAGAGACATGGGATGTTGTGTTTCAAaggcaaaaaaaatgtatgcatcaTTGCGCTAAAGTTGGCCTGACAGGTTAGTCTGTGTCTTGACAGCTATCAAGGGGTCTTGATTTGCCCCTGTAATGTGCCCAAACTGTAGTGCTCATCAGGGTTTTTGTCAATACCAGACAATTCATATAGTAAACCAAATATAATTTCCAAATTATCATTGAtaagcattgaagagaattggaatttcagtgtacttcctgaattgactggatttgaaatggaattgaccccaaccctggtgctCATCATTCATATATCTCTTAAATGTTCTGTATGCTTGACCCTTTGCTCCCTCACTTTTTATGATTATGTTTTTACCACCAATAAAAAGGGAAATTAAATCCTTGTTGTCTTGA

Function

GO:

id name namespace
GO:0007029 endoplasmic reticulum organization biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332027 lncRNA downstream 63227 70743342 ~ 70744122 (-) True G292773
TU331923 lncRNA downstream 191801 70613960 ~ 70615548 (-) True G292686
TU331906 lncRNA downstream 226255 70579424 ~ 70581094 (-) True G292669
TU331606 lncRNA downstream 233090 70573179 ~ 70574259 (-) True G292420
TU331552 lncRNA downstream 242694 70555501 ~ 70564655 (-) True G292384
TU332146 lncRNA upstream 139348 70949397 ~ 70949788 (-) False G292869
TU332147 lncRNA upstream 139348 70949397 ~ 70949788 (-) False G292869
TU332148 lncRNA upstream 139348 70949397 ~ 70949788 (-) True G292869
TU332208 lncRNA upstream 231111 71041160 ~ 71041699 (-) True G292927
TU332212 lncRNA upstream 233591 71043640 ~ 71043881 (-) True G292931
XM_036975067.1 mRNA downstream 809 70771156 ~ 70806540 (-) True LOC110520510
XM_036975066.1 mRNA downstream 810 70771156 ~ 70806539 (-) False LOC110520510
XM_021597886.2 mRNA downstream 813 70771156 ~ 70806536 (-) False LOC110520510
LOC118964359 mRNA downstream 586885 70220330 ~ 70220464 (-) True LOC118964359
XM_036975048.1 mRNA downstream 671817 70125298 ~ 70135532 (-) True LOC110520496
XM_021597890.2 mRNA upstream 555 70810604 ~ 70837491 (-) True LOC110520512
XR_005051368.1 mRNA upstream 86460 70896509 ~ 70907574 (-) True LOC118964322
XM_036975070.1 mRNA upstream 134985 70945034 ~ 70950599 (-) True tmem30c
XM_021597894.2 mRNA upstream 140632 70950681 ~ 71009703 (-) False cmss1
XM_036975071.1 mRNA upstream 140632 70950681 ~ 71009719 (-) True cmss1
TU332000 other downstream 86758 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 699399 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 810744 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1550805 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1956495 68846611 ~ 68850854 (-) True G290713
TU332200 other upstream 217570 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1093265 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1363000 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1761200 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1965358 72775407 ~ 72776607 (-) True G294697

Expression Profile