RNA id: XM_036975071.1


Basic Information

Item Value
RNA id XM_036975071.1
length 2068
RNA type mRNA
GC content 0.45
exon number 11
gene id cmss1
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70950681 ~ 71009719 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTTCTTGAAACATTTACAACTTAACAGATGCCACTTTCGTGACTGTTTCTTTGCAGGGGCTTTGTCAGTGTAGACTCAACCTAATGTAGTAAGTGTAGAGTTGATGTCTTGTCCATAATGTCCCGGTAACACTTCCGTTTAAACTGTTCACAAATGTCATGCGATTGTGAACAACCAGAAGCCACAGCGCAGCGGTAGTTTTGGATTTGAAGATGGGGGACGATTTAGGTGATGACTGGTGGGAACAAAAGGGTAATTCTGggggggtctccagTCCCAATTAAGGGTGAAATATGTCCCCTGTGTCATGCCGTCATCACACAAGCATTTCCAAAACCGCCTGAAGGCCCCCAGTTCTCTGGAAATGTCACTATTTATAGAAGGGACTGTTGATTCCCCCGtgggagaggagagtgaagaaCCAGAGAAACAGCCCACAGAGCAAGCATCCCCACGGGAGAAGAaaggaaagaagaggaagagtgTAATGGAAAACCCAGTCCCGGTCAAGAAGAAGACTGCACTGAAATCACAGACTGAGTGTTTTATGGCTCAGGAGAAGAAAGAGGATGAAGGAGAAAAAAAGCCCAAGAAAAAGAGAAAGaagaagaagaagacgatcACAGACGTCCTCGCCACCTCGGACCCCAAACCGGGCTCTCCAGTTGACCTGCAGAGCCTGGTTCTAGAACACTTCAAAGACAAACGCTCCGTCATCGAGCTGGAGGAGCTCAAACTACAGGAGTCCTGCTTCGTGAGGAGTAATGACCTCACACACAGCCTCTCCTCCTACCTGAAAGAAATTTGTCCCAAATGGGCTAAGGTCCAGAAGCAGCACACAGAGAAGAGTTCTGTGGTTCTGCTCATCGTCTGTAGCGCCGCACTAAGAGTCATCGAGCTCATCAAACAGTTAACCACCTTCAAGGGAGAGGCCAAAGTGCTGAAGCTGTTTGCAAAGCACATCAAGGTAGAGGAGCAGGTGAAGCTCCTACAGACGGGGGTGACACACATTGGGGTGGGGACGCCAGGGAGACTGAGCGCCCTCATTGAGAAAGAGGGTCTGACCCTGCCTCCCCTGCGTTTCCTGGTTCTGGACTGGAACTGGAGAGACCAGAAGCTTCGCAGGATGGTGGATGTTCCTGAGGTCAAAGGTGACTTGTTGAAGCTGCTGGATATGGGAATCTTGAAAGGATGTAGGGAAGGAAAAGTGAAAGTGGGACTGTTCTGATACAACCACACACCTAGTGCCATAATCtgccattttattttatttgtttcacctttatttaaccaggtaggccagttgagaacaagatctcatttacaactgcgacctggccaagataaagcaaagcagtgcgacaaaaaacaacacatggacacaagttacacatggaataaaataAAGTATAGTCAATAACAATtgaaacatctatatacagtgtgtgcaaatggagtaaggaggtaaggcaataaataggccatagtagcaaagtaattcaaatttagcaaattaacactggagtgagagatgtgcagatgatgatgtgcaaataataatactggtgtgcaaaaagagcaaataaaaacaatatgaggatgaagtaggtagattggatgggctatttacagatgggctgtgtacagctgcagcaatcggtgaGCTGCTCAGATTGCTGATGCCATATACtgagatacaaacacacacctagtGCCATACTCTGCTATATActgacatacaaacacacacccaacCAAGTCAGACTGGACCTCTTCTCATCATGCTCTTGTTCACACGCgtgcacaaacactcacacgcaACAAAGTTTATTAGGGCCCCTCAAACCAATCCTGTCTCCATAACAGACCGACTGCTGGACATTTCAACCATCTACCCTATCCTGTTTTTACCCTCTCCCTCTGTGACACTGTGTTCTTGTTCTATTTTAAGTGACATGTAAAATATCTGAAATGGTTTATACAGTGTTGTAGTTCAACAATAACACAGCTCTCTGTGTGACACAGCCCAACTGTGTGATGGTTTGAATAAAGACATTTGAATGGAA

Function

GO: NA

KEGG:

id description
K14784 CMS1; protein CMS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332146 lncRNA downstream 893 70949397 ~ 70949788 (-) False G292869
TU332147 lncRNA downstream 893 70949397 ~ 70949788 (-) False G292869
TU332148 lncRNA downstream 893 70949397 ~ 70949788 (-) True G292869
TU332027 lncRNA downstream 206559 70743342 ~ 70744122 (-) True G292773
TU331923 lncRNA downstream 335133 70613960 ~ 70615548 (-) True G292686
TU332208 lncRNA upstream 31441 71041160 ~ 71041699 (-) True G292927
TU332212 lncRNA upstream 33921 71043640 ~ 71043881 (-) True G292931
TU332339 lncRNA upstream 153019 71162738 ~ 71172116 (-) True G293042
TU332345 lncRNA upstream 158538 71168257 ~ 71172419 (-) True G293046
TU332341 lncRNA upstream 160967 71170686 ~ 71174999 (-) True G293043
XM_036975070.1 mRNA downstream 82 70945034 ~ 70950599 (-) True tmem30c
XR_005051368.1 mRNA downstream 43107 70896509 ~ 70907574 (-) True LOC118964322
XM_021597890.2 mRNA downstream 113190 70810604 ~ 70837491 (-) True LOC110520512
XM_021597888.2 mRNA downstream 140632 70807349 ~ 70810049 (-) True jagn1a
XM_036975067.1 mRNA downstream 144141 70771156 ~ 70806540 (-) True LOC110520510
XR_005051369.1 mRNA upstream 662740 71672459 ~ 71676171 (-) True LOC118964323
XM_036975076.1 mRNA upstream 698763 71708482 ~ 71716359 (-) False LOC110520517
XM_036965166.1 mRNA upstream 744560 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 764311 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 764311 71774030 ~ 71785012 (-) False rnaseh2b
TU332000 other downstream 230090 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 842731 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 954076 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1694137 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 2099827 68846611 ~ 68850854 (-) True G290713
TU332200 other upstream 17900 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 893595 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1163330 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1561530 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1765688 72775407 ~ 72776607 (-) True G294697

Expression Profile