RNA id: TU333074


Basic Information

Item Value
RNA id TU333074
length 2670
lncRNA type sense_over
GC content 0.48
exon number 2
gene id LOC110520517
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71708482 ~ 71716359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGACAGGTTGAGCCGGAGCAGAGCGCGGGAACACCCGGGGTCTCTCTCGCGGATATCCAGGGCATCAAAGCGTTCCTGAAAAAGTGTTGGGGTTTAGACATCAGTACCAAGGAATATGCCTACCTCAAAGGAGCCGTGCTCTTCAACTCAGaTCTCCCTGGTCTGTGCTACCTCAACTACATCCAGTCACTGCGGAGCGAGGCACACCAGGCTCTCAACGAGTATGTGAAGCTGATCCACCGGGACGACGCCACGCGCTTTGCCAAGCTGCTCATCGCCCTGGCCATGCTGAGGGCCATCAGCCCCCCGGTGGTGGCACAGCTCTTCTTCAAGCCCATCATTGGAGCCGTCAATATGGAGGAGGTCCTGCTGGAGATGTTTTATGGGAAGTAGAGGCTTTCTATggtcctgtccagaaacaacccctagatATAGCCCCCAAGTCCTTCTCTTAGTCCTTACTCCCTAGGCAATTTCACCTATTCCCTACCCACTAGAAACGTGACCTTGCCCTAGACTCTCCACCCCCATTTCCCCACTTCCGCTAGCCCCTAGCTCCTATTGGATAGTAATAAGCAAAAACATGCCCAATACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTGTACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAACGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTGTACAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAACGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCAGTTGGCTATAAAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTGTACAGGAACAATATGATAGTTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAAGATGATAGCTCCATCTTACCCTCCGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTGCCTTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTACCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGGTTGGCTATAAAGGAACAATATGATAGCTCCACCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCCCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCCCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATAAAGGAACAATATGATAGCTCCATCTTGCCCTCCGGTTGGCTATACAGGAACAATATGATAGCTCCATCTTGCCCTCCGGGTTGGCTGTACAGGAACAATATGATAGCTCCATCTTACCCTCCGGTTGGCTATAAAGGAACAATATGATTGCTCCATCTTGCCCTCCGGTTGGCTATAAATGTTTTTTTCGCTATATTACATCtatcaaatcctctcagatcaATATCTGTGGGGTTTATTCTGGACTGGCCCTTTCCATCGAACGGACAGAAGAACACATCTGTAGTTCTAGTAGAACTAACTAACTGTTAACCAACCGTTTGATCTGAATGGACCGTTGAACAGAAGGACAGACAAAGGaagagatgtgtgtgttttgttaaagatgttttggacactggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333056 lncRNA downstream 39603 71669109 ~ 71669337 (-) True G293691
TU333050 lncRNA downstream 49307 71659345 ~ 71659633 (-) True G293685
TU333046 lncRNA downstream 52107 71656423 ~ 71656833 (-) True G293681
TU333045 lncRNA downstream 53958 71654700 ~ 71654982 (-) True G293680
TU333007 lncRNA downstream 103701 71604583 ~ 71605239 (-) True G293645
TU333095 lncRNA upstream 15913 71731579 ~ 71731796 (-) True G293725
TU333104 lncRNA upstream 22613 71738279 ~ 71738586 (-) True G293729
TU333106 lncRNA upstream 23868 71739534 ~ 71740039 (-) True G293731
TU333113 lncRNA upstream 35724 71751390 ~ 71751794 (-) True G293738
TU333114 lncRNA upstream 36246 71751912 ~ 71752323 (-) True G293739
XR_005051369.1 mRNA downstream 32769 71672459 ~ 71676171 (-) True LOC118964323
XM_036975071.1 mRNA downstream 699221 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 699237 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 758341 70945034 ~ 70950599 (-) True tmem30c
XR_005051368.1 mRNA downstream 801366 70896509 ~ 70907574 (-) True LOC118964322
XM_036965166.1 mRNA upstream 38613 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 58364 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 58364 71774030 ~ 71785012 (-) False rnaseh2b
XM_021597899.2 mRNA upstream 58364 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597901.2 mRNA upstream 216755 71932421 ~ 71935177 (-) False trim13
TU332200 other downstream 668788 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 988349 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1600990 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1712335 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2452396 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 187648 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 457383 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 855583 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1059741 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1160673 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile