RNA id: XM_021597903.2


Basic Information

Item Value
RNA id XM_021597903.2
length 2213
RNA type mRNA
GC content 0.47
exon number 2
gene id trim13
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71932421 ~ 71937033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCCGATGACCAAAGTCGCCATGACATGATGGATCCATTATAGCCATGACCATCGTCATATTGTAGCTGTAGACCTGTCTTATCCTAACCTGTTACGAAAAGTCACTAAGGACACAAGTTGGATTCAGACGTCCATTTTATAACGAGGGACACATTTCACTTTACATCTGAACACCATGGAGCTTCTAGAGGAGGACCTGACTTGCCCAATTTGCTGCTGTCTCTTTGAGGACCCCCGAGTTTTGCCGTGCTCACACAGCTTCTGCAAGAAGTGCTTGGAGGGGATTCTGGAGGGGAACAACCGAGGACCTGTTTGGAGACCCCCGTTCAAATGCCCCAGTTGCCGCAAGGAGACTCCTCAAAACGGCATAAACAGCCTCCAGATCAACTACTCGTTACGTGGAATCGTTGAGAAATACAACAAAATCAGAGTGTTGCCCAGGATGGCCCTGTGCAAACACCACAGTGGTCAACCGCTTAATATATTCTGTGCCACAGACTTGAAACTTATTTGTGGATTTTGTGCAACAACTGACGACCATAAAGGACATACATTCTGTGCCCTGGAAGACGCGTACGAGCAGGAGAAATCCGCATTTGAGGAGCTGTCCCAGGGAGTGGAGAGTTGGCACAGCACGGATATTCTATCCTGCCTGGAGACACTGGAAGCCAGTAAGAAAAAGGCGCTCCAGTTAGTTTCCAGGGACGCAGAGAAAGTAACCGAATATTTTGTCAAACTGATCAACGCCCTGGACCACAAAAAGAACGAGATCCTCTCTGATTTTGAGACGCTGAAGTTGGTGGTGATGCAAGCCTACGACCCAGAGATCAATAAATTGAGCGATGCGTTGGAGGAGCAGAAGCGCGCTCTCAGCATCGCCGAGTCCTTCAGGAATGTGACCGACCCCCTTTGCTTTCTCGAGCAGATGCAGGAGTTCAGGGAGAAGTTGCGCGTTGTCCGGGAAACTCCGCTGCCCTCCCGGACAGACATGGACGTCGGTCCCTTGGTCAGGAATTTTGACGTCAAAAATTGGGACTCGATGAAGCTCAAAGATGTGGACAAGCTCTCCGTTCCGCACGAGAGTGGCGTGTATAGCTCAACGACCCCGCATTCCGGCGGCAGCGCGCTGGGGAGAGTGGTCGTGTTTTTTGTGTGCCTTTTATGCGCCCTGGTCCTGCTGCAGCCGGACAGCCTGACCGCGGTGTCAGCCCAAATCTCCTCGCTCGGCAATGTCTATCTGCCAgtgctggctggatggctggaacTGGCTCACGGTGCGTGGCAGTGCTGGGGAGAGGTAGTGGATGCCTGCGTTGCCTGGTGGGTGCGTTTCTGAACTGTATCCCGAACCTCATTAAGACACCTGCCGATTTTCTTGACCGCCTTGTAAACACAACTAGCGAATTTCTTAGCCGTTGTAAATTTCTTTAGATTTCCCGAGTGTTATTTTTGCTACATGGATCTGAAGCAAGCAATGTCCATGCTATAAGTAGATTTATAGCAAACACTAGAAAGCTATTCAAGTATTTAGAAGCACATATGTATCATGCTTTgtgaatttatatatatatatatatataatctaaaCGTAGAACAACCATACAACACTAAGTTAAATCAAAACACTATTGCAGTACATTAAATGTTGTCATTTGAGAACGCTATTCTGGTGAGTGTTAAGCATCAGCTCTGACCAGGAGCACCATCCATCCTTCTCCAAGCCATATGATCGATCACACAGGTCAGTCTGTCACCTCAGGATATTTCTTTTACTATACATTCCACAGGCTAGATTGTAGGATAGGAATAATATTTACATCGAGTTTAAGTGCTGTCGTTTATTTTTGCCTTACTTTAATTGACCATCTGTTGAGTTGTCATAATGCCTCATACCCTGTCACCAGACTCATTTTTTTGCCTAATAAAACATACATTTGGTATTTTCCTTCATCTTTATTTTTGAGTGACTGAGGGGATTTCACAAATTGTGGAGGCACTTTTTTTCGCACGTGTAGGCTACTTTACCGGTCAAGGTCATAAGTGAAGCTTCAATTGGTGCGCCTGCACACTGCTCATGTGACATGAAATACCATGCACCCGCACAGGCGTTCAAATGCTCGTTTGATGTTTGTCTTCCCTGTGGATCGGTCATCACCGCGCGATTTAACCTCCACCGGGGCCAAGGTTGAATGTTGCATAACTAGGCCTATA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12003 TRIM13; tripartite motif-containing protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333448 lncRNA downstream 7131 71925077 ~ 71925290 (-) True G294012
TU333447 lncRNA downstream 8122 71924064 ~ 71924299 (-) True G294011
TU333444 lncRNA downstream 17254 71914933 ~ 71915167 (-) True G294008
TU333442 lncRNA downstream 21877 71910309 ~ 71910544 (-) True G294006
TU333438 lncRNA downstream 24997 71907041 ~ 71907424 (-) True G294002
TU333451 lncRNA upstream 8157 71945190 ~ 71945443 (-) True G294015
TU333480 lncRNA upstream 42768 71979801 ~ 71980106 (-) True G294042
TU333483 lncRNA upstream 80042 72017075 ~ 72018622 (-) True G294045
TU333427 lncRNA upstream 178464 72115497 ~ 72118615 (-) True G293991
TU333535 lncRNA upstream 221942 72158975 ~ 72159261 (-) True G294093
XM_021597899.2 mRNA downstream 147408 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597898.2 mRNA downstream 147409 71774030 ~ 71785012 (-) False rnaseh2b
XM_036975077.1 mRNA downstream 147424 71774030 ~ 71784997 (-) False rnaseh2b
XM_036965166.1 mRNA downstream 167677 71754279 ~ 71764744 (-) True LOC110504652
XM_036975076.1 mRNA downstream 216062 71708482 ~ 71716359 (-) False LOC110520517
XM_036964604.1 mRNA upstream 40780 71977813 ~ 71979314 (-) True LOC110505427
XM_036975078.1 mRNA upstream 49287 71986320 ~ 71995551 (-) False LOC110520524
XM_021597908.2 mRNA upstream 49287 71986320 ~ 71996875 (-) False LOC110520524
XM_021597910.2 mRNA upstream 49287 71986320 ~ 71996879 (-) False LOC110520524
XM_021597911.2 mRNA upstream 49287 71986320 ~ 71996882 (-) False LOC110520524
TU333405 other downstream 28513 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 892269 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1211830 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1824471 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1935816 69980346 ~ 69996605 (-) True G291901
TU333434 other upstream 236016 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 634216 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 838374 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 939306 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1635259 73572292 ~ 73572911 (-) True G296011

Expression Profile