RNA id: XM_036975089.1


Basic Information

Item Value
RNA id XM_036975089.1
length 6054
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC110504660
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72121974 ~ 72206818 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATCGAAAAGGCAGCGGGACTGGGGGAAAGACTGATGTGAAAGGAGATTTCTAGAAGGACAAGAAGATAAACGCACTCTTGGAAAAAACAACCAATGGAAGAGGTGTAAATAAGCTGTTCAAAAGTGCTTGCAATGATCCGTTTTGCAAACGTTTATTCGTTGTGAAAAGGGACATTCTGGAAACTATGAATCAAGGATAGCAGTACAGTCACATTTAACAGCTGCATGGCTGTCCAAAGCGCAAACATGAAAGGATGACATGGAAATCAGAACAGCCGACTGAAAGACCACTGCTTTCTCACGCTCATATAGATGGAGAGACAGTGCTTGTGAACGATGTATACTGGAAGAGAGATGAACATTAGGTAGCGTCGGTAAATATCcaaaaactggaaggaaagtggACAGTAAAGAATAGCTGGTGGGTAGCTGTCAAAAGGATGGATTTTAGCGTACTACGGAATCTCATCAGTAGATACTGTGCTGGGGAGGAGTACTGGGTGGACAGCCGGACAGTATACATCGGTCACAAAGAACCCCCGCTGGGGGCCGATGCCTACATCCCTCAGCGTTATCCCGACAACCGCATTGTCTCTTCCAAGTACACCTTATGGAACTTCATCCCCAAGAACCTGTTTGAACAGTTCAGAAGAATCGCCAACTTCTACTTCCTGCTCATCTTCCTGGTCCAGctcaTCATAGACACGCCCACCAGCCCCGTCACCAGCGGACTGCCTCTATTCTTTGTCATCACCGTCACTGCCATTAAACAGggTTATGAAGACTGGCTGAGACACAAGGCAGACTGCAGTATAAATGAGTGTCCTGTGGACGTGGTGAAGGAAGGGACGGTGGTGAGGACACAGAGTCACAAGCTACGGGTGGGGGACGTTGTCATGGCGAGGGAAGACGAGACGTTCCCCTGTGACCTCATCCTGCTCTCATCCAGCCGTGATGACGGAACTTGCTACGTCACCACCACCAGCCTGGATGGCGAGTCCAGCCAcaagACCTACTATGCTGTACCAGACACCATGGTCTTTAAGACAGAGCAGGAGGTGGACTCTCTGCATGCGACTATTGAATGTGAACAACCACAGCCTGACCTCTACAAATTTGTGGGGCGCATCAATATTTATAAAGAAAGTGAAGATCCCATAGTCAGACCCCTGGGAGCTGAGAACCTTCTCCTCAGAGGAGCCACCCTGAAGAACACAGAACACATttatgCTGTAGCCATCTACACGGGCATGGACACCAAGATGACGCTGAACTACCAGTCCAAATCCCAGAAACGCTCCGCTGTAGAAAAgtcTATGAATGCATTCCTCATAGTGTATCTGTGTATCCTGATCAGCAAAGCGGTCATTAACACAGTGCTGAAGTACGCGTGGCAGTGGTCTGCTGACCACGACCAGCCCTGGTACAACCACAGGACCGAGATCGACAGAGAACGCCACGTGgtgATCAGGGCGTTCACAGACTTCCTGGCCTTCATGGTGTTGTTTAACTACATCATTCCAGTCTCCATGTACGTTACCGTGGAGATGCAGAAGTTCCTGGGTTCTTACTTCATAGCCTGGGACAAGGATATGTACGATGATGAGCTGGGGGAGGGGGCTCAGGTCAACACATCAGACCTCAATGAAGAGCtgggacagGTGGAGTATGTGTTTACTGATAAGACGGGCACGTTGACAGAGAACAACATGGAGTTTATAGAGTGCTGTGTGGACGGACTCGTGTATATCCCCCACGCCATCTGTAACGGACAGATCCTCAGTGCTGCTTCCAGTATAGACATGATCGACTCCTCACCTGGAGGAGACCACAGGgagCATGAGGAGCTGTTCTTTCGGGCTCTGTGTCTGTGCCACACGGTgcaggtgaaggaggaggagacagtggACAGCATCAAGAGAGGGATCCACCAGGGAAAACCCACCTCCTTCTACATATCATCttctcctgatgaggtggcattGGTGGAGGGCATgaagaggtTGGGGTACACATATCTAAGACTCAAAGACCGTCATATGGAGATTCTCAATAAGGAGGATGAGATTGAGAGGTTTGAGCTGCTACACGTGCTGAACTTTGACTCTGTCAGGAGGAGAATGAGCGTCATTGTCAAGTCTAGTGCAgGGGAGTACCTGTTGTTCTGTAAGGGGGCTGACTCCTCCATCTTCCCCAGAGTGGTGTCAGGGAAGGTGGGGCAGGTGCGGGCGCGGGTGGAGCAGAACGCTCTGGAGGGCTTGCGGACCCTGTGTGTGGCATACAGAAGTCTCTCCCTAGCAGAGTACGAGGAGGCGTGTCATCAGCTGAGCGACGCCAAGCTAGCCCTGCAGGACAGGGAGCAGCGACTGGCGCAGGCTTATGACCTCATCGAGAGGGACTTCACCCTGCTGGGGGCCACGGCTGTGGAGGACAGGCTCCAGGAGAAGGCAGCAGACACCATTGAGTCTCTCCATAAGGCTGGGATGAAGGTGTGGGTCCTGACGGGGGACAAGATGGAGACGGCGGCTGCTACATGTTATGCTAGCAAGCTGTTCCGCCGCTCCACCCAAATATTGGAGCTGACCAAGAAACGAACCGAGGAACAGAGTCTACATGATGTTCTGTTTGACTTGAGCAGAACCGTACTGAGACAGCGCTCCCTGTCGCGGCTGTCTGTAGACTGTCAGGACTATGGTCTGATCATCGATGGGGCCACCCTGTCTGCGGTGCTGAAGCCCAGTCCAGAGAGCTCCGGCTCTGGGAACTACAGAGAGATCTTCCTGGAGATCTGTAGGAACTGCAGCGCCGTTCTCTGCTGCCGCATGGCTCCCCTACAGAAAGCACAGATTGTGAAGCTGATCAAGGCGTCtaaggagcaccccatcactctggCCATCGGAGACGGAGCCAACGACGTCAGCATGATCCTCGAGGCACATGTGGGCATAGGCATCATGGGTAAGGAGGGTCGCCAGGCAGCGAGGAACAGCGATTATGCCATCCCAAAGTTCAAACACCTGAAGAAGATGCTGCTAGTTCACGGCCACATCTACTACATCCGCATCGCTGAGCTGGTGCAGTACTTCTTCTATAAGaatgtgTGCTTCATCTTCCCTCAGTTCCTCTATCAGTTCTTCTGTGGATTCTCTCAGCAGCCCCTGTACGACACAGCCTACCTGACGCTGTACAACATCAGCTTCACCTCCCTGCCCATCCTCCTCTACAGCCTCATAGAGAAACACGTCAGCATAGAGACACTGAAGAGCGACCCCACTCTGTACAGGGACGTAGCTAAGAACTCTCTCCTGCGCTGGCCCGTGTTCCTGTACTGGACATGCCTGGGCTTATTCGACGCCTGTATCTTCTTTTTTGGTGCCTACTTCCTGTTCGACAACACCACCTTCACTAGCAACGGACAGATGTTTGGGAACTGGACTTTCGGGACTCTCGTCTTTACTGTGCTGGTGTTCACGGTCAcgctcaagCTTGCCTTGGACACACACCACTGGACCTGGATCAACCACTTTGTCATCTGGGGCTCCCTGCTTTTCTATGTCATCTTCTCTCTGCTCTGGGGAGGCATCATCTGgCCTTTCCTGAACTACCAGAGGATGTACTATGTGTTCATGCAGATGTTGTCCAGCGGTCCGGCTTGGCTAGGCATCATCCTGCTCATTACGGTCAGCCTGCTGCCTGATGTGGTCAAGAAGGTCCTCAGCAGAACACTGTGGCCCACCGCCACCCATCTTGCACAGTCCAATCGCCCGTGCCTTACCGTGGAGCCGTCCACCATCTTCGTGCTTTCTCAGTCCGATAGCAGATTGAGTTTCTGATTGGCCGAGAGACGTCAGAGGAGGAGAGGGTGAAGGCTGATGGGGTGTGTGAGGGGAGTGTGTCCTCTGCCCCGGGCGCCAGTCCTGTTGATGGAGGTGGAGGCAGTGAGAGAGGCATGCTTTGCCCTGCTAGGACCTgtgagggggacagaggaggtggaggggtgcaAGCTACCAGGACCTATGACTCCATGATGTCACACAACCCTAACTACCTGCTCAGCCAGCCCCTAGACCATTCCCCATCAGAGACCTAGGGTTGCTACGgACGTTGACAAGCTGTTGCAGGGCAGTGTAGCAGAGTTGACCCCCGTGCTCCCATGCCCTTCTGGCCCTTCCTCCAAACGGAAGTGTACTGACTCCTCCCACCTCCACATCAGGGTTCCGATGCCCCTCCCACTCCGCAGGTCTGAGTCCTTCCCCCACAAACTACTATTGGCCCACTGGACTGATTGGGGCGGGGCAGACCGCTGCACCCTCAGCCCCTACATGCTCTGCCTCTCAGGGACTGGCTTTGCCTGCTACACACCGGGGCCAGAGACCTTTGtgtgacacacactcacacacacgcaggctAATGTGTGAACACACACAAAACGATGTGTTCACAAaagatgtgcacacacacagagaccaatGTGATCTAAACTTACAGCTTACCATGGATGTGGAAGGATTTGTATTCCACTCATAaacaatgcaaacacacacacacacacacacacacatttgcaaaaTAATTCACACATACTGAAAAACATGAAACATCTTCACACAATTCACCATGTGCTTAGTCAGCCATTCAGATACACCGCTCCCCCAATCTGCCTCCCACTGGTCCTGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCTATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCATTTCAGTGTGGTCCTGATCCCAGTCCATTCCATTTCAGTGTGGTCCTGATCCCAGTCCAGTCCACacctctactctgttctgctacTCTCTAATCCATGTTAAAATACTTGAATCCAACGTTGACACCAGTGGCGTTACACACTGAACACACGGAGGTGTTCAGTGTGTGAATGTGCGTCCCTTCTACACTAAGGAATTGTGTATGTGTTTCTATTTTATTAACTGTCTGTCTtcttctttttctctgtctctcaaatGTACTCATTTTGTTGAAATAACGGGAGTTGCTTCGCAAAATGTTCTGGGGAGAAAGACATCTGTTATTcactgcacgtgtgtgtgtgtgtgcgtatgtatatACAGCTGaatttggaagtttacatatacttagcttggagtcaataaaacaatttttcaaccactccaaaaaattattgttaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333427 lncRNA downstream 3360 72115497 ~ 72118615 (-) True G293991
TU333483 lncRNA downstream 103353 72017075 ~ 72018622 (-) True G294045
TU333480 lncRNA downstream 141869 71979801 ~ 71980106 (-) True G294042
TU333451 lncRNA downstream 176532 71945190 ~ 71945443 (-) True G294015
TU333424 lncRNA downstream 177443 71926065 ~ 71944532 (-) True G293990
TU333571 lncRNA upstream 18239 72225057 ~ 72225299 (-) True G294126
TU333588 lncRNA upstream 31280 72238098 ~ 72243509 (-) True G294143
TU333672 lncRNA upstream 43995 72250813 ~ 72271706 (-) True G294198
TU333683 lncRNA upstream 76991 72283809 ~ 72284009 (-) True G294209
TU333691 lncRNA upstream 103283 72310101 ~ 72310991 (-) True G294217
XM_036975080.1 mRNA downstream 7462 72010695 ~ 72114513 (-) False LOC110520523
XM_036975084.1 mRNA downstream 7462 72010695 ~ 72114513 (-) False LOC110520523
XM_036975085.1 mRNA downstream 7462 72010695 ~ 72114513 (-) True LOC110520523
XM_036975082.1 mRNA downstream 7463 72010695 ~ 72114512 (-) False LOC110520523
XM_036975090.1 mRNA upstream 57560 72264378 ~ 72266650 (-) True LOC110520529
XM_036975092.1 mRNA upstream 284030 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA upstream 286619 72493437 ~ 72537370 (-) False LOC110520531
LOC110504707 mRNA upstream 569898 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 584486 72791304 ~ 72825267 (-) False LOC110504714
TU333405 other downstream 218067 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1081823 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1401384 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2014025 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 2125370 69980346 ~ 69996605 (-) True G291901
TU333986 other upstream 364431 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 568589 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 669521 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1365474 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1425220 73632038 ~ 73633036 (-) False G296043

Expression Profile