RNA id: XM_036975090.1


Basic Information

Item Value
RNA id XM_036975090.1
length 2273
RNA type mRNA
GC content 0.48
exon number 1
gene id LOC110520529
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72264378 ~ 72266650 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGCAATGTTTTCCACCATGTTCCCCCAGTGTGTTCCTCTTTCACTAGCTCAGCGTCACCTGACTGAGCGCCATGCAAATCTCTCTGCTTCTAGAACGCCATTGGCCGCTCGTGGCTCATTTAACCGCTGTCAAGGCACATCGTATGGCTGCCGCTTTAACTAACTTCTCAACTCTGACAGGGAAAGTGGCTCAAAGGCGCATTCTGTCAGTGGATGTGAACCAACAACCGGAGAGGAGATAAAGCACGCACAGAACATTTCTGAGATTCCCTCTTTCTTGGATTATTAATTAAGTTTACATTTCACTCATTTTGAGGTATACAATTGTTGATCCCTCGTGTGTACCTGCTCCGCCAGACTCGCGCACCGACTGAATCAGACACATTTTTTTCTGTTGGTAGAAAGTTTGAAAACCAGGTGAATGTATAGCATGATGATGGAGACGGACCTCCATTCCCCTGGACCCCAAACGAACACAAATTCGGGGCAGACGGGACCGAACAGCGGGTCCAAAGCGAATCAGGACCGGGTGAAGCGTCCAATGAACGCGTTCATGGTGTGGTCCCGTGGGCAGCGGAGAAAGATGGCCCAAGAGAACCCCAAAATGCACAACTCCGAGATCAGCAAGCGGCTGGGCGCGGAGTGGAAGGTGATGACGGAAGCGGAGAAGAGACCCTTCATCGATGAAGCGAAGCGGTTACGAGCCATGCACATGAAGGAGCACCCGGATTACAAGTACAGACCAAGACGGAAGACCAAGACCCTGCTGAAAAAGGACAAATACTCTCTGGCTGGTGGCCTGCTCTCTGGGGCTGGCGGTGGTGGAATGGGTCTGGGGGTCGGGGTGGGTTCATCCGGGGTCGGCCAGAGGTTAGAGAGCCCCGGGTGCCACGGGGGCTCCGCCAGCTCAGGCTACACGCACATGAACGGCTGGGCGAACGGTGCGTACTCGGGGCAAGTGGCTGCAGCAGCTGCGGCCGCGGCGATGATGCAGGAGGCGCAGCTAGTTTACAGCCAGCACCCGGGCAGCgggcaccaccaccactcacaccaccaccaccacccgcaCAACCCCCAGCCCATGCACCGCTACGACATGTCGGCGCTCCAGTACAGCCCCATCTCGAACTCTCAGGGCTACATGAGCGCCTCTCCGTCCGGCTACGGCGGGATCACCTACACGCAGCACCAGAGCTCTGGCGTCTCCTCCTCCGCTGCCATGAGCACGTTAGGGTCGCTGGTGAAGTCAGAGCCGAGCGTAAGCCCTCCCGTTAGCACTCACTCCAGGGGCCCTTGCCCCGGAGACTTGAGAGAGATGATAAGCATGTATTTACCGACCGGAGAGCCCGGGGACCCGTCGGTGCAAAGTAGACTCCACGCAATGCCGCAGCATTACCAGAGTGCGACGGCTGCGGTGAACGGAACGGTTCCGTTAACACATATATAGATTAAGCTATTCATAAGACTATGGAAACTGCAGACAGAACACAAAATAACATAAccaaatatttacatattttttttaatgatcaCGGAACTAGGCCTACCTGCATTTTGTACAGAATGTTTATGGTGATGTTGTAAATTAAAGGTAAATTAGCCTATCCATTTCGCCTTTTGGAGTATATACAGTCCCTTACGCACAGGATATGAGTTCAAATATTGGTTGTTGTGTTATAATTTTGACCTTTTTATGAAACCCACTTGTGGTTTAGGGCGATGCCAAATGAATGAATACATTTGGTTAACTATAATCGTATTATTCTGGGTTCACTGTAAGTTATAGAATAATAAGATAACATGGTTTTCATAATCATAAAAAAATGTTCAATATTGATTTTTCCCCATTTGCTAATTACCCAAGCGTTTGTAAACATGTCCGTTTATACTATGTCTATTTATGATCATAATGATCTCTTTTTATTGTAATAATTATTGTAAATTGTGAATAATTTTTAATATTTTAAAGACTGATGCGCAATTGCTATTGTATAATTTACGAGGTGCGATTGCGctgaaatacaattaaaataaatttCACACATATGTTGCTCTGGTTCTACAAAAAAAGTCTTAGCTTGATTATTGTTCACTATCTTCGGTTGCAAATTACAATTTGAGTTGTGTTTAATTTGAAACACACGAACATGATCAAAAAGTCTGACGCAAAGCTACGGATAGGCCACagtaaatgttgttgtttttataagGGGAAAGTGTCTCTGGCAAACCCGTAACATTAAGCACGTTATTAAAAAGCGTATCAACTAA

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333588 lncRNA downstream 20869 72238098 ~ 72243509 (-) True G294143
TU333571 lncRNA downstream 39079 72225057 ~ 72225299 (-) True G294126
TU333541 lncRNA downstream 91896 72172079 ~ 72172482 (-) True G294099
TU333539 lncRNA downstream 94345 72169702 ~ 72170033 (-) True G294097
TU333538 lncRNA downstream 98041 72166106 ~ 72166337 (-) True G294096
TU333683 lncRNA upstream 17159 72283809 ~ 72284009 (-) True G294209
TU333691 lncRNA upstream 43451 72310101 ~ 72310991 (-) True G294217
TU333706 lncRNA upstream 77545 72344195 ~ 72344445 (-) True G294232
TU333731 lncRNA upstream 121340 72387990 ~ 72388223 (-) True G294248
TU333739 lncRNA upstream 125856 72392506 ~ 72392841 (-) True G294256
XM_036975087.1 mRNA downstream 57560 72121974 ~ 72206818 (-) False LOC110504660
XM_036975086.1 mRNA downstream 57560 72121975 ~ 72206818 (-) False LOC110504660
XM_036975088.1 mRNA downstream 57560 72121975 ~ 72206818 (-) False LOC110504660
XM_036975089.1 mRNA downstream 57560 72121975 ~ 72206818 (-) False LOC110504660
XM_036975080.1 mRNA downstream 149865 72010695 ~ 72114513 (-) False LOC110520523
XM_036975092.1 mRNA upstream 224198 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA upstream 226787 72493437 ~ 72537370 (-) False LOC110520531
LOC110504707 mRNA upstream 510066 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 524654 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 524654 72791304 ~ 72826819 (-) False LOC110504714
TU333434 other downstream 57580 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 360470 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1224226 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1543787 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2156428 70107540 ~ 70107950 (-) True G291977
TU333986 other upstream 304599 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 508757 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 609689 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1305642 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1365388 73632038 ~ 73633036 (-) False G296043

Expression Profile