RNA id: XM_036975102.1


Basic Information

Item Value
RNA id XM_036975102.1
length 5037
RNA type mRNA
GC content 0.49
exon number 25
gene id LOC110504714
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72791304 ~ 72838453 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAATTCAAACACATTCACTTAGACATAGGATGTTATGTATTGTGTGGCTGTAGGATTGTGACGCAGAGAACATGACTCATAGCCAGTCAGCTAGTGGCCGAGTGGGAGCGATAAGACACAGCTTATCAAATCGGGATCAAGGCTGGGTTGTTTTTCTGGTGGAATGCCTCTTTATATAgaggtgtggaaacactgagCAGAGCTCCATCGCTAAGAGACCAGAGATGAAGAGACCGTCACACAGGAAATGATCATTCCAACACACACAGGGATCTGATCTGAAGAGAGTGTTTGTGTGAGGAGGGCGTGTGGTGTCTGTTCTTAACCCCCTCCACCCCTTACCCAGAATCCTCTTCTCCAACCCCTcagacccctaacccctgacccccaAGCCATGATGTCGGGGAAGGGGAAGGTTAGCCCGCGTCACCGGCCATGGTCCGTATACCGTGCTAACACCTTTGACCACTCTGCTGAGATGATGGGACTGACACTGGCAGgtAACAGTCAGGACCCAGATGAACCGGTGTTGGAGTTCAGTCTGGCCTGCAGTGAACTGGTCACACCAGCGTTTGATCGTAAGCCAATCAGCTTTGTGGCGGTCAGCTGTACAACTCCTCCCCAGGCCTTCTGGACCAAACACGCTCAGACAGAGATCATAGAGggTACCAGTAATCCTATCTATCTGAGTAGTATAGCATTCTTCCAGGACTCTCTGATCACTCAACAGACGCAGGTCAAGCTGTCTGTGTACGACGTCAAGGACCGCTCCCAAGGCACGATGTACCTGCTGGGATCAGCCATGTTCCCAGTTAAGGAGCTTCTGCAGGACAAACACCACAGACTCCACCTAACCCTCAGGTCAGCGGAGAGCGAACGCATGGGCAACATCACCATCATCGCCTGGCagatagaagagaggacagagcagAGAGCCACCGCGGCCCGGCAGGACACTATCAATGGCAGGATGATGCTTCAAGTGGATGACAGCCTGACTGAGTCAGTGAACATCAGGGCCAAGTCTGCATCTCTGTGCAAAGACACACTGCTTAAGGCTGTTTTTGGGGGCACCATGTCACGTATGTATCGATTCCCCACCACGGATGGAAACCACCTGAGGATCCTAGAGCAGATGTCTGACAGCGTCCTCTCTCTACACATCCCTCGACAGTTTGTCAAACTACTGCTGGAGGAGGACGCTGCCAGggTGTGTGAGCTGGAGGAGTTGGGGGAGTTATCTCCATGTTGGGAGAACCTGAGGAGGGAGATCATTTCTCAATACCAGACCATCATCCTCACCTACCAGGAGACCATCTGCGACCTGCACCAATATAAAGGTCCATCCTTTAAATCCAGCACTCTGAAAGCAGAGAAGAAGCTGGAGTTCATCCCCACTAACCTGCACGTCCAGAGGATGAGAGTACAAGGAGAGTCTGGCTATGACAGGACCTATGACGTAGTAACTATAGGGGCCCCAGCAGCCCACTACCAAGGCTTTAAGCACTGTGGTCTCCGGAAACTTATCCACAAGTTTGAGGAGGCTAGGAAACACGCATATGAGGAGGAATGCAGTTCTGGGTCTAGCTCTAAGCCGGTGGCCTACCTGCCTCGGGACGTGTTGAGAGCGAAGGAGCTGATTGGTCAGGTCAACACTTTGAAGACTCAGGTTTGCTACTACACCGAACGTTTGTCCCGCGCTGCCAAGGAACGCTCAGCCAACGCTCTGGAGAGAACCCTCGCCATCCTCTCTGAgaagaCTCGTCAGTTGGTGACAGTCTGTGACTCTAAGCTGCTGTCCTCAGCCATCCTAGCCCTTACTGCCGCCCGGCCGGAATGCATCGTCCAGAAGGGCAGTCCCTCCCCATcgtccctcaccccctctccatcCCGCTCCCCCTGTCGCTCATCTACCTCACCCTGtcgctcctctacctccccctcacGCCAATCCACCTCCCCCTCGCGTCGCTCCATCTCCCCTCGCCACTCAGTATacgtggagggagagagggggagaggcaagcgctcctccctacaggctgacTGGCATGAGGAGGACTGGGAGAAGGTGTGGTTAAATGTAGATAAGAGTCTGGACTGTGTGATCCAGAGGGTGGAAAGACTGCTGGCCAAAGACAGGCTGCAGAGTGACAGCAGCAGTGAGGATGTGTTCCTGGATGCTCAGCAGCTGACCAACGCCATTACTAAGAGAaGTATCCATGGAAACAGGGAAGCCTTCTGGATACACCCTGGATCGTCATCTTCATcacctcttcttcctccatcATCATCAATGTCATCATTCCCTCATCTGAGCACCACATGTCAATCAAACCATGAAAGACAAAAGCACTACAGCAGCCCAGACATAGAAAAAGAAAAGCCCTCCCCAGGTGAATGGAGTGATGCGTTGTACCCTCTCCTGACCACCCTGTCCGAGTGTGTGTCTCTGATGAGTGACAAGGCTAAGAAGTCCATGGTGTTCCTCCTAATGCAGGACAGTGCTCCCACCATCGCCATGAACCTCACGCTACAGTACCGAAGAGATGTGGTCTTCTGTCAGACGCTGTCAGCTCTGATCTGTGGCTTCGTCATCAAGCTGAGGAACTGTCTCTGTGACGACGGCTTCCTCAGGCAGCTCCACACCATCGGCCTGCTGGTCCAGCATGAGGGCCTGCTTAGCACCTATGGGGATGAGCTGGCCATGTTGGAGGACATGAGTGTTGGCGTGATGGATCTGCGGAACGTCACCTTTAAAGTCACCCAGGCAACCTCGGTCTTCGGCCCAGACATGCTGCCTGTCATCACCGGGAACCGGGACGGCTTCAACGTCAGGGTTCCGTTACCAGCGCCGATGTTTGATGCGTTGCCGCGGGAGATCCAGAACGGCATGCTGCTGCGGGTGCAGCCTGTTCTCTTCAATGTGGGAATCAATGAACAGCAGACACTGGCAGAGAAGTTTGGAGACACATCTCTCCAGGAGGTGATTAACATGGAGAATATGGCTCGTCTCAGCTCCTACTACGACCAGTACAAAGAGGTCCTGCCTGAGGACTGCCTCCCTCGTACCCGTAGTCAGACCAGCCTGCCTGAGCTGCTGAAGCTGCTCGGTCAGAACATCAGTGCCAGGAAGAGCAAGAACGTAGAGATCCTGTGGCAGGCAGCGGAGGTGTGTCGGCGTCTGAACGGCGTGCGTTTCACCAGCTGTAAGAGTGCTAAGGATCGTACAGCCATGTCTCTAACCCTGGAGCAGTGTCTGATACTCCAGCAGGAGCACGCCATGGCCCCACAGGTCTTCTTCCAGGCCCTCGACTGCATGCGCAGTGAGGGCTGCAGACGAGAGAACACCATGAAGAATGTAGGATGTCGTAAATACGCCTTCAACTCCCTCCAGCTGAAGGCCTTTCCCAAACAGTACCGCCCCCCTGAGGGCACCTATGGGAAAGTAGATACCTGATTGGACAGCTGCCCATCTCTCGAAGTAGCCAATAGAAGGGGACAGAGACTAGACAATGTCAacgtcaacaacaacataaaaaCAAAATAACTTCATGAAAGCAACCGATCCCTTTCTATAGTGCTGACTCACTGTTGATGTTATCTGTGGTAGATTGATAGCGCTTCCCTCTCCTTTGCGATTAGTATCTCTGCGTTATGGCATGAGAACCACTACacgcacacaacaacaacaacaacaacaacaacaacttaaaAACAGCTTTTGCAATACATTGTCACAGATTGTATTGATGTAAAACAAACTTTAGTTCTAGAGCTGCAGTTGTTTTAGTTGTACTTAGAGCTCTTATCATGTGGCCTGGGTTCTTACCACTGTCTCTCATGGAACATTTAAAGTCAATTTAAAGAGAACAAAACCTTTGTGTACAGAGCATCAGTGTGTTATTTGCTCATGATTATACACAAGGATTAGATGTCGACACTTGTATCTGTGATGTATGAAGACCCATCCCAAGCGTATTTGATAATGCAGCTACTGGACAGGGTTAGTGCAAAATGGAGCGCCACTATGCTGTGTTTTGGTTTTTCTACTGAGTCAAACAGTTGCAGTGACAGGGTTCATCTGTCCCTTGGCCACTGCATGTTTATTTTATGTTTTATATCTTGTCATTGAGTGCATGGTACAATGCTCCACTATATTAGATGCAAGCATGGATGGGGTTCACACACAACCAAATTCATCCAAAAACAACTCAATTAAAATATATGATCACATGCTTGTAGATTGTATTCAACTGAAAAATAACATAGTGTCCAAATCTTGCACTCCCCCCAACCCCTGTCTGTTCATAAAGTAATGTTTAGATCCATGACCCAGGTGGTAGGCATATTAACTTTAAATCAAACTATAGACTCAGTCAAACTATAACATATTAGCTTAGAGTAAGGACCAGTGTTATAAGAAATATTATGTGGGCAGCTTTTCTCTGCGAGTTTCATCTCTTTTAAGAACCCCAGAGGAATACTACAACACTGATAGAAGCTAACTCACTCTGACGCTGCAGAGGGCGCCTGACGGACTGGACCACCACAGGAGCAACAAAACACGGCTTTATTTGTACAACCGTTAGATAGAAAAGCCTTACATTATTATTGTACGTTTGGATATAATGGACTGGTACAGTGCATAGAAAGAAGTCTGTTTAAAATGCACAGCGTTATGCGTTAAATTGTACTGTGAACCCCTCACTAGCTTCTGTTTCCATGTTTATCCATAGCTTTTATTGCACATTACAGAgacagtttatttttatttaggaaAACATTTTTAAACTTTATTTTGCTGAATATTATTGATGCTGATTGATGCACTGAAAATTGCTGAAAAAAGTTGCCAAAATGCTGCGAgttttatccatccatccatatatgtCATGTATTTTTCTTTGTGTGTATTGAGCCACACACTTTCAGGTGAAAACATCTGTATCTGTACAGGTACAGGCTTTGCTGTAAAATGTGCTTTCCCCCTCAACTCTGTAACTTAAAATTAAAATATGAGCAGTAAACTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334228 lncRNA downstream 95281 72695469 ~ 72696023 (-) True G294648
TU334224 lncRNA downstream 100794 72690187 ~ 72690510 (-) True G294644
TU334219 lncRNA downstream 103337 72686975 ~ 72687967 (-) True G294642
TU334200 lncRNA downstream 128061 72661725 ~ 72663243 (-) True G294626
TU334047 lncRNA downstream 144146 72646950 ~ 72647158 (-) True G294495
TU334311 lncRNA upstream 5515 72830782 ~ 72831306 (-) True G294720
TU334349 lncRNA upstream 45626 72870893 ~ 72871890 (-) False LOC110520539
TU334372 lncRNA upstream 59762 72885029 ~ 72887639 (-) True G294760
TU334374 lncRNA upstream 67070 72892337 ~ 72892537 (-) True G294762
TU334375 lncRNA upstream 67751 72893018 ~ 72893271 (-) True G294763
LOC110504707 mRNA downstream 8430 72776716 ~ 72782874 (-) True LOC110504707
XM_036975092.1 mRNA downstream 249176 72490848 ~ 72542128 (-) False LOC110520531
XM_036975091.1 mRNA downstream 253934 72493437 ~ 72537370 (-) False LOC110520531
XM_036975090.1 mRNA downstream 524654 72264378 ~ 72266650 (-) True LOC110520529
XM_036975086.1 mRNA downstream 584486 72121975 ~ 72206818 (-) False LOC110504660
XM_036975108.1 mRNA upstream 45585 72870852 ~ 72881264 (-) False LOC110520539
XM_036975111.1 mRNA upstream 200021 73025288 ~ 73034616 (-) False fhl2a
XM_036975112.1 mRNA upstream 200021 73025288 ~ 73039384 (-) True fhl2a
XM_036975115.1 mRNA upstream 337249 73162516 ~ 73266610 (-) True uxs1
XM_036975116.1 mRNA upstream 512903 73338170 ~ 73490996 (-) False st6gal2a
TU334284 other downstream 14697 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 215872 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 584506 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 887396 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1751152 71027619 ~ 71040152 (-) True G292919
TU334351 other upstream 51072 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 747025 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 806771 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 807037 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 947887 73773154 ~ 73775299 (-) False G296102

Expression Profile