RNA id: XM_036975108.1


Basic Information

Item Value
RNA id XM_036975108.1
length 3504
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110520539
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72870852 ~ 72881264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGCCGTGACACACGTGAAAGCACACTAACTGTTAAAGTAATGATTTAATAACTGCAGACACGTTTACGCAGTCATAGCAAGACACACAGAATGTATGCATACTAGCACAGAGTCAAGCTGAGAGTCTTGCTGAGAGAGTTGCTGTATTAGAACGACTGACAGATATTAAATACAGAGCTTGGCTTACTGTCTGACATCAGGTCGATACCACCTGGTAGATCTCTCGGTGAGCCAAATGGGACGAGACTAGACCCCAGCAGGTCAATCATCCACATGACGCTTCAATGAATCCACTTTGATTAAATGGACGCCAAATATGACAATATCGGTACATCCTCAAAAGTTTGAATTGAGGTGGTTGGAAGTTAAATTGAACACGAACACCCCTGAAGAAAGCGAATATTCCCGAGACTGCAGGGTGTAGATGACAGTAAGCGTTTCCGCATCGACCCGTAGCGTGCTGTCATTGCGGGAGAATGAACAACGCAAAATGTTGCATATTAAATCAAATACCAAGGAGACGAACACGGATTATACAATGTATCTATGTGGTGGGGTTCATGgACCTGTTTGGGGTGAGCTTGATCATTCCCCTGCTGAGTCACCATGTCAAGGCCCTTGGGGCCAGCCCCACCGTGGCAGGCTTAGTAGGCTCCACATATGGGATCCTACAACTCTTCTCTAGCACTATAGTTGGCAGCTGGAGTGACGTGGTGGGGAGGCGGTACTCTATGCTGTTGTGTCTGCTGCTGAGTGCTCTGGGCTACGGCCTGCTGGGGATGTCCACCAGCATCGCCCTGTTTCTCCTGGCTAGGATCCCTGTGGGTCTGTTCAAGCACTCCCTGTCCATCTGCCGAGCCCTGCTGTCTGATCTGGTGTCTGAGGTGGAGCGCCCCCTAGTGATGGGACACTTCAACGTGGCCTCCAGCATGGGCTTCATCTTGGGGCCCGTGGTGGGGGGCTACCTCACTGAACATGACGGAGGCTTCTACACCGCATCCTTCACCTGTGCCGCCATCTTCCTCCTCAACGCAGGTCTAGTTTGGCTGCTTCCCTGGAGCGATGCACTAACCCCACGCACCGATGCTAACTCCAACAGCAGCGCTAGCAATGCCAGCTGCCACGACAACGACAACCACTTCACCTCAACACAGCAAAACTGCTCCCAAGGCAACAGCGACAACCAAACTACAGCGCCGGCGGCAGCGGTCACGGGATCCGTGGCTCCAGAGAAGAACCAGCGGAGCTGGAGCTGGGATCTGGACTGGGGGGAGGTGTCCCTGCTCCCTTCTGCCTGGCGTCAGCTCTCTTCGGTGGGCTCCAAGATTAGCAGTGTGGCCTCCTCAGACATGTGGGACCTGTTCCTGGTGCGTCTGCTCATGGCCATGGCCATAATGCTGTACTACAGTAACTTCTCCCTGGCCATGGAGGAGCGCTTCATGCTGAAGCCCAAAGCCACAGGTTATCTAATCAGCTACAGCTCTACCCTGGGGGCCCTAGCCGGGTTCTTGGTGGGACCCATCACTAAACTGTACGGTAACAACATGTCGGCGCTGTTGCTACACTCTTCGGTCCTCACGTGTTGCCTGATCCTGCTCTACGCCGTAGCGCCCAGTGTCTGGCACGTGTTGTTAAGTTCCACTTTCATCGCCATCTCTACAACCATCGGACGCACCTGCATCACTGACCTGGTACTGCAGAAAGGGGGCGCTCACGCCAGCGGCACACTCATCGGGGCGGGGCAGTCAGTGACCGCGGTGGGGCGCGTGCTCGCACCCCTACTCTCGGGGCTGGCCCAGGAGTTTAGTCCCTGTGGGCCCCCGATTCTGGGGGTAGGGCTGGCGTTAGCGGGCATCGTCCTGCTGTTGGTCAGGGTGCCAAAATGGgatgagagggggaaagaggcatAACTCTGAGTCACTCACAGTGAGAGAGTGAATGAATGAGAGAGTGAATGAATGAGAGAGGGTCAAAACTACAACAGCACTGGAGACAGAACTGATGCAGAACTGTTGGGGTTGGTTTTTGTTAACGTGTCAGCTGGGGGTGGTtccattgtttgttttttttagccACAACTCCAGCTCTGTTGGTTGGGTCTCGatgtgatgacatcacagcaCCGATAGGACCCAGGTCATCATCAGCATCGCTCTCTTCCCCCCACTTCAGTCCCCCAAACAGACCGGGTCATCATCAGCATGGCTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGTATGGCTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGCATGGCTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGTATGGCTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGCATGGTTATTCCCCACTTCAGTCCCCCAAACAGACCAGGTCATCATCAGCATGGCTCTTCCCCACTTCAGTCCCCCAAACAGACCGGGTCATCATCAGCATGGCTATTCCCCACTTCAGTCCCCCAAACAGGGGAGAATGCAAAAAGTTCAGTGTTGCCAAGGCGACCGTGAACAAAGCCAGCAACCCTCTGTAAAAGGCATGGGAAGTTGTCCATGCTAAGTTAGCTTAGCGTAGGTCAACAGCATGTCAGTGGCTCATTAGGTTCTTATAACCTAGAAATATTCAAATGTTTATGTCTCTAGTGAGAGGCAATAATTcaattaaaaacaacaacatataaGTCTAATGTTACTCTAATGTAATCCTGCTCTTCCTTAACAACCACTACAAATAGTCCAGGATAGTATTGGTACTGAGAATGCTAATTTCCCCCAAATGCTCTGTTTCTGACCTATCTTATGAGGGTGGACAGCAGGTGAAGgggctcctctttcctctctggcGCCACATTCTATTTTCTCTCCCTTCTCACAGAAGTGTGCACTCCGTCACCCTCCCTTTAAGGGTTGAACATATTTGGATCAGTGTGAATACATCCACACCAATCCAGTGCTTTTGAATCCTTTTGTGTGAGTGATCTGGTACACACTGGGGAAACGGATCAAGAACCTTAACTGAGCTTGAGTACTGGTTGTCCACAGGCACATATCTAGGATTCATTTACCCTTCCTAAACCCTAACCACGCAGGGGAAGTTAAACACATTTTCCAAGGATCTTAGGTCAGTGTCTGTGGGTAACATCATCGTACTTCCTTTAACCACTACGCTATCAGGGCCTTTTCAATGGAAATCTTTACTTTTATAcaaatatataatttattttcattttatatTATTTTCCCTTATTCTACATTGTCCATATTGAGTTTAGTCTAATTCATAAATGTACTGttaattattatttatatatGAATGATCTTATTTTGAATGGAGTTGCCCTTACACTGACCCAAATGCCACTGAATGTTATGAAGACACTTATTGTGCTGAATGATTCGTATGAAGGAAGTAAAGATCATACCATTTGACAATAAAATAAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU334311 lncRNA downstream 39546 72830782 ~ 72831306 (-) True G294720
TU334305 lncRNA downstream 49542 72819132 ~ 72821310 (-) False G294715
TU334304 lncRNA downstream 49542 72820526 ~ 72821310 (-) True G294715
TU334303 lncRNA downstream 51200 72818606 ~ 72819652 (-) True G294714
TU334278 lncRNA downstream 70995 72764953 ~ 72799857 (-) True G294691
TU334372 lncRNA upstream 3765 72885029 ~ 72887639 (-) True G294760
TU334374 lncRNA upstream 11073 72892337 ~ 72892537 (-) True G294762
TU334375 lncRNA upstream 11754 72893018 ~ 72893271 (-) True G294763
TU335499 lncRNA upstream 66744 72948008 ~ 72973805 (-) True G295738
TU335512 lncRNA upstream 81043 72962307 ~ 72962674 (-) True G295750
XM_036975104.1 mRNA downstream 32399 72791304 ~ 72838453 (-) True LOC110504714
XM_036975101.1 mRNA downstream 36388 72791304 ~ 72834464 (-) False LOC110504714
XM_036975105.1 mRNA downstream 36388 72791304 ~ 72834464 (-) False LOC110504714
XM_036975106.1 mRNA downstream 36388 72791304 ~ 72834464 (-) False LOC110504714
XM_036975107.1 mRNA downstream 36388 72791304 ~ 72834464 (-) False LOC110504714
XM_036975111.1 mRNA upstream 144024 73025288 ~ 73034616 (-) False fhl2a
XM_036975112.1 mRNA upstream 144024 73025288 ~ 73039384 (-) True fhl2a
XM_036975115.1 mRNA upstream 281252 73162516 ~ 73266610 (-) True uxs1
XM_036975116.1 mRNA upstream 456906 73338170 ~ 73490996 (-) False st6gal2a
XR_005051374.1 mRNA upstream 456906 73338170 ~ 73490996 (-) False st6gal2a
TU334284 other downstream 94245 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 295420 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 664054 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 966944 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1830700 71027619 ~ 71040152 (-) True G292919
TU335813 other upstream 691028 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 750774 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 751040 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 891890 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 891890 73773154 ~ 73775299 (-) True G296102

Expression Profile