RNA id: XR_005051374.1


Basic Information

Item Value
RNA id XR_005051374.1
length 7240
RNA type mRNA
GC content 0.46
exon number 7
gene id st6gal2a
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73338170 ~ 73505121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAAAGGCGATATATTTCACGCTAGGTTACAACCTCAAAGCAAAAGAGACATCGAGGCTCCGCCCACCACTCTCATGCTGAGGGTGCACGAAAAAGGCTTGCGACAATGTGAGACGACACCGAATGTGCAGCTTTCATGAATCTGATTTCAAACAGCGCTGTGAAACCGGACCACTGCCCGCACAGCTCGGTTAACGGAGGAAAAAACGGACACTAGCCTGCCTTCTAAAACAATGAAGACAAACATATTTCCTAGGCCCTCCTGTTGTCCTCTCTGCTGTGTCCTGGCTTCTGACTGCTGATTGGAGCTGGCCTGGTGTGCGTATAGGTGTGTGAGAGATTGTAAGGAGATGAAGTCCAGTATGCGTCAGTGGCGGAGGCTGCTGTTGGTGGGCATGTTGGCGTGGGCCCTCCTCTTCCTGGCTCTGCTCTCCTACTTCCTGGATACCCCTGTGTACAACGAGCCCCTGACCTCCGCCAGCTCCTCGCTCTCCCAGCACCCCGACACACGGCGCCTGGCCTCCATCCAAGGCGCCTCCCACCAGCAGCACCGCTCCATCATGGGCTCCCAGCCCGAACCCACCTACAACACCTTTACCACAGAATATCCCGACCAAGACCCTAACCATTACCCAGACTCCGAGCCtagctcctcctccaccacccctgaGCCTGGCCTGGAGCTGAGCTACGGGACCAGCCAAGAGACGGAGGGGGGCAGCCGCCAGCAGCAGGATTACCTGGACGCCCAGACCCTGGCTGCCTGGTCCTCCTCTAGCACGGAGAACGTGGGTTCCCACTCCGACCTAACAGTAACTCGAAACAGTGAGAGACCTGCCTGGACCGCCTCCGCCGGCCGGGGGCCCAACCGAACCACACGCAGGTCCTCACGTGAGGATGAGGAGGGGTTAGAGACGAACAAAAGCCACAAGAGGTGGATCATGGTGGGGGATCATGGGGGGGAGAGGCGAGGAAAAGAAGAGGATGGTTTAGAGGAGGACTACTCCTCCAAGTCTGCCTCACTGGTGCAGCGACTCTGGCGGGGAAAAGTGTCCTCTGGGATGCTGTCCCCGCGACTGCAGCGCGCCAAGCGGGACTACCTGAGTGCCAACAAGCACCACGTATCCTATAAAGGAGGCCGGCGAGCTGCTCAGAGCTCCAGGGAACTACTGTGTGAGCTGAAGGACCAGGCCCGGCTGAGGACGCTGGACGGGTCTGAGCAGCCTTTCTCTTCACTGGGCTGGGCCCACTTGGTACCGCGCTTGACCCTGGAGCAGCTCTACAGACAAGGGGGCCAGAGAGGCTTTAGGAGCTGTGCTGTGGTGACCTCTGCTGGGGCTATTTTGCACTCAGGCCTGGGGAAGGAGATCGATTCCCATGATGCAGTTCTGCGGTTCAACACAGCACCTACAGAGGGCTATGAGAGGGACGTGGGGAACAAGACCACCATCCGCATCATTAActcgcagATCCTGGCCAATCCTGATCACCGCTTCAACACCAGCTCCCTGTATAAGAACGTGACTCTGGTGGCCTGGGACCCTGCTCCGTATGCTGTCAACCTGCACAAGtgGTATGCCAGTCCAGACTATAACCTGTTCAGTCCGTACGTGGAGCACCGGAGGCTCCACCCCACCCAGCCCTTCTACGTCCTACACCCCAAATATGTGTGGCATCTCTGGGATGTGATCCAGGGCAACACCCAGGAGACCATCCAGCCCAACCCACCCTCCTCTGGGTTTATAGGTATCCTCCTGATGATGGCGCTGTGCGAAGAGGTCCATGTGTATGAGTACATCCCCTCGCTGCGGCAGACAGACCTGTGCCACTACCACGAGCGCTACTACGACGCTGCATGCACCCTGGGGGCGTACCACCCGCTGCTCTATGAGAAGAGTCTGGTGCAGCGCATCAACACAGGCCCTGTGAGAGACCTGAAGAGGAAGGGCCGTGTCACCCTCCCCGGCTTCAACACCGTCAACTGTGAACTCTGAACTAGGAAGCCACACATGGAACCACCATGACTCCACGCGTCTAAGGGAAAACGGTGCAATAAGAACCCTCTGGACTCTGACCTTAGGGGGAATCCAGAGGCAACCATGTAGAACCACGTAGAGCAGTGGAGAACCTAAGCCATAGCCCCTCTGTGTGGGATGGGATCAAACTGAAGGGTACAGCTCTAGTCTAAGTACATAAATCAGGATTTATCAACAGAACCCACATCGGTCAAAACCTTGCCTTCCTCAGaggcagggttgggtaggttactttctaaatgtaatcaactacagttactagttacctgtccaaaattgtaatcggtAATGTaatttttggattacccaaactccgTAACCTAATCTGATTACGctcagttacttttggattacgtagaagaagacaaaaagattcatcaaatgcatttggtgtgtcatcatagtggtctctgattggtggtcatcatttggtgtgtcatcatagtggtctctgacttgtggtcagactcgctcaggtggaacaaacttaaccttgcccctttttttcaatgcttaattgaatgtcactgagaaaacagaaaggtgtcataatgtattttttcgcaaacatcctttctaaTTTTAAAAGTAATCCAAAAAGTATCTGCAATCTGATGATagtatttttgctggtaacgtaactgattacagttaccagttgttgtaatcagattacattcaATCAGCTACTTTTCAACCCTCTTCAGAGGGTTAACAAGCCCAAGACATGCCCAATATGACCACCTCTATCTCTGCCATTGCTGAGCCGGAAGAGAGAAGAGCTGTCTAGGGTAGCAATAGAAAAGTGTTTTTAGATAGAGAAACGTTTTTGATATATTTGGATGTTTTTTGCTGTTGTGAAGCGTTGTTTCTCCAGAGCTCTGGTTGCTCTTCTTTCTTAAAAGGACAGTCCACAGTTTTTTTAATGGTGGGTGTTTGTGTTTTTTAATGGTGGGTTATGACTCTCATGGGGTGGTAAATTAATGTTTAAGAAAATGAGCAGTGGTCCGCACTGAATGTCTCACACACGTCCATATCGAACACACACTTTTGAAAAGGTACAAACTCTGCGTCCACCAGCCACACTCCCGACAACATGTAACACACCTGAAGTTGTAATGGAAATGTACCTCAAAGTctacacatacacaacacacacctgTACATACAGGCACACTGGAACTACACCAAACCCTTTTCGCCTTCTAAGTATTATCAACCAAGATGGAGGTACATTGTTTTTGATCTACAACTGTCACATTTTGCTGTATTTGACATTCCTTAAATGTTATTTTCTATTCTTATTTGTTGTTGTCAATGATTTTGAGTGTTGTTTGCTGCTACTGCGCTTTATGTTACTCTCCTGTCCAATCACCAAGCTTGACCCCACCGGACCAGTTGCCAATAAACAGATTGTCACACTCCCCACTTAGCACTTTAAGACTGGCTAATGACAGGCTGCCACTTCAAAGGCATGTCTGGTGGGTAGTTGGGTACCAAACCCTGGAAAAAAACATTGGATGCCCATTCTTAGGTTTAATCCAGTACACCAAATTATGAGAGGCTGGGGGTAAGAGAAGGGACTCACAAAATGTTCTCAAAACAGCTATAACCCTGTGCCTAGTGGCCAAAAGAACACTGGGTTGCCTTTCAAAACACCCTCAGACTGATTATTCACATATGCCATCCATTTAACTGCAGTGTCATTGTTGAACTTGTTGTTGCATATTTCATTGTTTAATAGCTGAGATTTAAAGAAGCCTGCTAATCAGCCCATAGCTCAAACCGTCCTGTGTTCTGTTAGTGGCGAGTAGGAGATCACTAGTCAAACTCCCATACTGTCCAGTGTCCACCCCATGCCAAAAGGCAATCTGGCGTCTCTTTAAAAGCAGCTGTAGCTACTGCGCTGATTGACCTGTCACTTTGAATGTAATCAAACCTCTCCTTAGGGCACTTCTCTCTACGAGCACTACTCTGACTGTGTGCCATTTGATGGAGTCAAGAGAATGAGGGTTTCAGTCTGCAGGGTTCAGTAGCTAGACTGCCTCCCAGGCATACAGCAGAGCGTAGTCTAGTTCTACCTTGAGACTATCGTTCATTATGTCTTTACCGTTGTCATTTTGACTCAATACTCCAATATTGGTCTGAAATGACTATTTTGCCTGAGCTTGCAGTAGCCTGCCCTGGTGCACTGCCGGGGGACATTTCTTATCGTGGCAGGGATTTCAAGCAGTAATATCTCCAGACTCACTTTGTGTTTTAATGGCTTTGTTATTTACCCTGACTCTGTGCCAGACTTGCCTACAGTATATTTCAGCtagcgtgcgcgtgtgtgtgtgtgtgtgtgtgaaagcaaaggaaaggaaaggaaaggaaaggagatggGGGATTTCTCAGAGACCTAGTCTAATAGTATGTTCTGTAGGATCAATATCTGGCCATGCTGGAATGGACAATGGAGGCTCAGTTGTTTCCAACCACAAATCCGCTTACAACTACTAAGCCTCACCTTTATCCCCAGCTGACCCAATGAAAACAAACAGATCATGTACTTGTCCATCTAACCTATTTGTCACTGTAGTTCTCTCTGTAGCGGCCAGCTAGTGACCATTCCCTGGCCAGGGGAAACATGGAAGGGGTTGATATTGGCAGTCAGTGACATGCAAATAAGAGATGTGTGTTAGCGTTTGTTATTCTGTATCGTGTTGCTATGCCCTTGCTCCAGGAACCATGCTTAACCAGGGTTGCATAAAGGAATTGATTCAGTTCTACACATGGCAAACAAACGCTGCTTGGGATAAACCGAGGCAACTGTTGTTGTATTCAGGTGATAGAAGAGAGACCGAACAGGAATACCATTAGTTAGAGCTGTTTTAAATCTGTGATGTGAAGGCTGTGTCGGTATGAGGGGAACTCTGATGGCTCTTTGCAATTTTTTGAATTTCTTGTAGTATTGTACGTTCTTATTACATTGAAtgttgtacattttttttataaattgtgTTCATGCAGGGCTCCCTTGGATAGAGACCTTTGTATTCAATGGAACTCCCTGtagaaataaaggttaaataaaaataaataaagcctTGGCAGTAGTTCGGGGAGCTAACGCAagttcaggtctcaggcaaggttactcagCACGCAAGCGTGGTTCCGAATAACTGTTACACTGGCACCCCAGGCAAGCAAAATATCACACCTGATGGAAAGAAAATATTGGCTTTGAGTAGCCAGACACACCGCTGTGTCGTATGATCGCCTAGGGCCAACCTCTCACTGAGAGATCTAACTGAGTGAAACAAGGCTGGAAGAGTCTCTTACACACAGTATATCAGAAGTATCATCTCTGACTCATCTCCATGCGTTGTTTATTATTGATGTTTACAAATCATCAACTGTAACTATGGTTACAAGGGGAGGGTGCATTACTGGAATATTTTGAAGTTTTCCAGTAAAATACCAGAATTTGGTATCTTAAAAATATTTTATGTACTCTTTCACAATATATCTAGTGGCTAATTTGGGTACTTCAGAAAATCAtgggtgtctgtaattatctctggccctctgtgtggccttatcacatgtaaaatatctAAAATAATGAAATAAGATATTTTTCAAAATGATGACAGCTGTAAAACATGATCCTAATTATAAACCATCAACTTGGTGAATACCACTGGTGTTTTAATGAGGCTTTTAGCATGAAGTTTCCTTTTTCGTTTTTTACACGTATTTGTTCATGTTTTGgtgtcaaactggtggcagttgtgtaAAAAGTCAATAAATGGAAGAGTTGCAGTTAATTGAAGAACTCCCATGTTGCTTAGATGCTTTTTTTCATGAATtgggctattttctcttgaaccatctggtctatctactagaaccTCGTGGATGATATAGACACAGATATAATAAATGAATGctatatatgaatacatttttacATGGTATAAACTACCAAAGTTACGATTGCCatattttctgttaattaccaaaatgaCTAAAGATCCAGTAAGtttggtaaattaccggtagcATTGCAACCCTAACTAATTGTAACTGTTACGCTTGTGATTGTGACACAGTGATGGtgcaaaaaaatatgaaattcaTTTGTAATAACTTTGTTTATATTCCAATGGACAGAGCATGCAAGTCTAACCGGAGCAGGGCTATGAGGTTTAAATTCTCCATgtatactgtactttactgttctgTAATTGACTGTACTTAACTGTAATTTAGTCTTTAGAGctccaagtaaaaaaaaaaaaaaagaccatgCTGGAAAAATGTCCAATATTTCTACTGTATATTGTGTGCGTAGGGAAATTCCATGCAGCTGGAAACGAGAGCAGCTATTATTAGCATCTTCATATGTTCTGTAGAAGCACTCCTTGATCAAATGCAATGCCTTTGGCAACGGTAGTGGAATCTTGATACTGTTcccaatgatttatttatttaacgtTTACTTGCTGATGCAGGTAGGTGGTTGGGTGGAAGGGGGCTATGTTTGTTTTCTAGCAGGTGTTTAGGGGGATAAAGACAACCAACATCTCTGTATGGACGGACTGGCATGCCAGACATCTCTGTATGGACTGGCATGCCAGACATCTCTGTATGGACTGGCATGCCAGACATCTCTGTATGGACTGGCATGCCAGACATCTCTGTATGGACTGGCATGCCAGACATCTCTGTATGGACTGGCATGCCAGACATCTCTGTATGGACTGGCATGCCAGACAACAAAGAGAAAGAGTTTGTTTTGGAGGTCATTGCTTAACTTGATTCCTCCTCCACAGTATGTTTTTTGATATCTCTCTCACTCGCATCCTTTTCTGTAGGGTGGAGATTCACAGCGCCACAACACTGCCTTTAAAATGGAAACATTTCACGTTTTTTAAGTTGGACGACTTGTAAGTTGTCTTCTGAGATTTCCAAGAGGGCTTTGAGCaaaggctgagaggagagggagagagagagtgtgggattCATCATGACCAAAGTGTTATAGAAAAGCACATTTCATTTTCAGCCTGTTGTTATGACTAAAACGTTCCTTTTGATTTGTCATTACAGGTTTTTTTACACAAAGGTATTTAAGTTGACTGTTGGTATAAAATTCAATTGTTGTTAATTCATTGTTATTTTTTACCATGTAAATAAAGACATTTTACATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335652 lncRNA downstream 120358 73216943 ~ 73217812 (-) True G295865
TU335612 lncRNA downstream 198387 73133474 ~ 73139783 (-) True G295832
TU335600 lncRNA downstream 215001 73120665 ~ 73123169 (-) False G295823
TU335812 lncRNA upstream 80255 73571251 ~ 73571774 (-) True G296010
TU335814 lncRNA upstream 82654 73573650 ~ 73573923 (-) True G296012
TU335845 lncRNA upstream 137043 73628039 ~ 73628383 (-) True G296039
TU335848 lncRNA upstream 140663 73631659 ~ 73631961 (-) True G296042
TU335865 lncRNA upstream 168512 73659508 ~ 73660094 (-) True G296052
XM_036975115.1 mRNA downstream 71560 73162516 ~ 73266610 (-) True uxs1
XM_036975112.1 mRNA downstream 298786 73025288 ~ 73039384 (-) True fhl2a
XM_036975111.1 mRNA downstream 303554 73025288 ~ 73034616 (-) False fhl2a
XM_036975108.1 mRNA downstream 456906 72870852 ~ 72881264 (-) False LOC110520539
XM_036975104.1 mRNA downstream 499717 72791304 ~ 72838453 (-) True LOC110504714
XM_021584649.2 mRNA upstream 56203 73547199 ~ 73561315 (-) False LOC110505436
XM_021584646.2 mRNA upstream 56269 73547265 ~ 73561315 (-) True LOC110505436
XM_021597942.2 mRNA upstream 100788 73591784 ~ 73597306 (-) True grk1a
XM_036975119.1 mRNA upstream 106446 73597442 ~ 73613774 (-) False LOC110520555
XM_036975118.1 mRNA upstream 106446 73597442 ~ 73613806 (-) False LOC110520555
TU334351 other downstream 457316 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 561563 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 762738 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 1131372 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 1434262 71903314 ~ 71903908 (-) True G293984
TU335813 other upstream 81296 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 141042 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 141308 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 282158 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 282158 73773154 ~ 73775299 (-) True G296102

Expression Profile