RNA id: XM_021597959.2


Basic Information

Item Value
RNA id XM_021597959.2
length 3436
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC110520572
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73870489 ~ 73877576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTTCCCGTTTCATATTGGGATTGCTACCAAGTGTAAATCTATTGAGATCTCTTTCCCACCTGATTATCAACAGCGCCCTGCACTGCAGTAAAGCTTATTGTAGTTTTTTTAACCCAAGCATAGTGGTCCTTTAATGACAAACGGACATTTTTGAACTACATATTCCAATCAATTCTAAGCGTTCTTTCTGTTGTTTGCGCCGGAGGTCTCTAACTAGACAGTTGTGCTTTGGCAAGCACGCTAGCGTAGCGAGTTTGGTGCAGCCTCGTATATTCTGCGCGAAATGGGAGTATCAGATTTGACTTTTGACACAACTGGTCCAGTGGTGGACCTGTCAGCGCAGGGTCTGCAGAAACTGGAGCCCAGTTTCACCTGCtctgatgaaacacacacactcattctggACAGGAACCACATCATGAAATTGGACAATCTGGAGAGGAGCCGAGGCCTCCAACAGCTGTCAGTTGCTGGTAACCGCCTGGTGCGGATGATGGGTGTGTGTCGTCTAACCGAGCTGAGAGTTCTGAACCTGCCCAATAACAGTATTGGCTATATTGAAGGGCTGAGAGACCTTCCACACCTGGAGTGGCTCAACCTGTCAGGCAACAATATCAAGGTCATTGAGCAGCTCAACGGCTGTGTGGCTCTCCAACACTTGGACGTGTCTTACAACAACATCTCCAACATTGGTGATCTTACCAAGCTGTTAGCCTTAAAGACCCTTCTCCTTCATGGTAACAGCATTACGACGCTACGGACTGTCCCCACTCATTTGCCCGCCCATCTGTCCATCCTCTCCCTGGCAGAGAATGAGATCAGAGACCTCAACGAGgtctcctacctggcaccCCTCCATGACCTGGAACAGCTCTCCATTATGAGTAACCCCTGCATCATGGCAACCCCCTCGTTGCCTGGATACGACAATCGGCCGTACATCATGAGCTGGTGCCTGAACCTGAAGATCCTGGACGGATACTTGGTGTCACAGAAAGAAGGGTTGAAGGCGGAGTGGCTGTACAGCCAGGGCAAAGGTCGCTCGTACCGGCCAGGTCAGCACGTGCAACTGGTCCAGTACCTTGCCACCGTGTGCCCTTTGACCTCCACGTCAACCCTGGAGACGGCCGAGGATGCCAAGCTGGAGAAGATCCTCAGCAAGCAGAGGTTCCACCAGAGGCAGCTCCAGCAGCAAACCCAAGGGGGTTCCCCCAGCCCTCCCCGCCCCACCCAGCTGGATGTGGAGACTCACAGCCCCTGTCATGTGCCTCCACTAGGGGGAgccagagaggcagacagagccaCGCCTGTGACTGCCccaccagccagacagacagaGCCAGCGATCCTGCAGATAAACACCTGGCTGGGCTGCGAAGCCTCCCAGGCAGGCGCACCTCCTCTCCGTGGCCCCAGGGGTATGGAGGACAGCCTCTACCTGGAGGACGTTCAGAGCCAGACGGACAAAGATAAACTCACCGGTAGTCTGCTCTCCTCTGAGTCCACCTTTCTACCTGTCACCTCTGACCCCGCCCACTCTGACAGCGAGGACGAAACTGAGACATTTGAGCCTGACTCGCTGGCGCCTGAACACCCCATCCGTCCCAAAAAGACCTCTCCTGAAAAGACCCAACACGCACCCTTGGAAAGGGAGATGGAAATGGAGAGCGAGGTGGATAATAGAGTGAAGGAGGTAAAAGGAGAAAGGGTGTCGGCTGACAGCCACCTCACCTGTACCTCAACCGTCAGTCCACCTGTGACGGCAGGTGACCAATCACAGACCAATGACAGCGATCCGCTCCAGGGAGCATACTCAAACTGCGTTGCTGCAGAGGTGAGGGTGGGACCTAAGCAGGAAGAGGAAGCGGTGGTGAGATGTGATAGGCTGGGCCGCTGTGAGGCAGACAAGGCAGCCGTCAGGATCCAGGCATGGTGGAGGGGAATGTGGGCTCGGCGTAACCACCCTCTGGCCAAAGAGGTCCGGTGTGAGATCCGCCTGCGCAGGATGCAGGAGCACATAATATTCCTGTCTGGAGAGTTGGAGAGGGTGCGCCAGCACCACGAAGAGGAGCGGTTACAGAGACTGGTACAGGAGGAGGCTGTGAACTTTCTATGGAGTCAGCTTCAGTCCATGCAGCAGTGGCAGCGTACTGTGGAGGGGCAGCTGGCCAGTGTGGCTCAGGCTGGGTCATCTCCTGCTCCAGCCCTGACCCCCGGGCTCCCTCCAGCTCTTCGGCTCCCCCTGCCTGTGGCCTTCAGCACTGCAGACCCGGCTTGCACAGACCTCTCCTTCCCGGACTCAGGCTTCCAGTTTACAGGTAAACAGCAGGCGGGGCAGGAAGACACCTTCCTGAGCTGTGGGACGGGCGACTCTCTGGAGACTGTGCGGGCGCTGGTCTTGGGGGGGTCCGTGGCTCCTGGCGTTGGGGGGGACAGTCAGGACTGCAGTCTGCTGGAGCAGTACCTGTCCTCTGTGCAACAGAGAGAGGCGGAGGAGGGGGGTGCCAGCGACAGAACAGGCACACCACagcccccctcacccctctcactGGCCGAAATGGAACAGCCTGACTCCAACACACAGAACACCGCCCAGAGTGAagacacagagcagcaacacacacTGGGAGGTCCAATCTGATGTGCCTGTCCCTCTCCTGGACTTTTCTCCTGGTCTTCTAGGATTAGCTAAGAGACTGCCCATAAACTCAGTCCACCTGTGCTGATGAATGTTATTGATGGCTCTAACAGCGCCTCTAAGAATTTACTGACTCACATCCATATAACGAGTGGTATATGGACTCAAGGATGTGGATGATATGTTTGTATAGCCCGGATGATTTTTCTCCCTTTAATTCTCTTGGACAATGCTACAGTATTCATTGTCATGATCTGTCAGTCCGTTTGGCTAATGCTTCCTTCACTTACGTTGGGGAGACGCGGGAACTGCCGTTCCAACTCCCGGCACCCCTGGTTTTTCCCCACGCGGCCGACACGCAATCTTATATTGCTGCGATTTAATGGTCATCCGCGGCGTGTCCCGATGTTAAGGGTTGCACGGCGGAAGACCAGATTCTCCAAGAGTATCAGATAGAACTACAATTCACATATATAAGTGCCGCTACTTGGTCGTCCCAAATCTCCTCAATGTCAATCTACCTTTAAGTAGAAACCGATTGGCTACAGTTCAGGCTAGACAGCTCGGCTCTAAATTTAATTCCAATTTCTTCTGTATTTAAATGCCTCAATCTATACTTGTATTCCTGCAGGTGAGTGAGAGGACCAGGTCTGGACTAGATGATTTGGCGTGAATGTAAATATCACAGCGTGCTGAGAAGGTAGTTTAGTTGCTGAGAATGGTTAAATGCAAATTGTAAAAAAAGATTTGTAAAAATCTGGTGCTCTATGTTTACACAATAAAATGTTTTCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335982 lncRNA downstream 24511 73845287 ~ 73845978 (-) True G296141
TU335970 lncRNA downstream 45825 73824192 ~ 73824664 (-) True G296129
TU335961 lncRNA downstream 52020 73817522 ~ 73818469 (-) True G296120
TU335957 lncRNA downstream 57359 73811954 ~ 73813130 (-) True G296117
TU335923 lncRNA downstream 60053 73809885 ~ 73810436 (-) True G296101
TU336050 lncRNA upstream 51477 73928861 ~ 73929759 (-) True G296193
TU335989 lncRNA upstream 70687 73948071 ~ 73949708 (-) True G296144
TU335990 lncRNA upstream 72541 73949925 ~ 73950171 (-) True G296145
TU335998 lncRNA upstream 73123 73950507 ~ 73951555 (-) False G296152
TU335999 lncRNA upstream 73642 73951026 ~ 73952102 (-) True G296152
XM_021597957.2 mRNA downstream 2114 73852084 ~ 73868375 (-) True LOC110520571
XM_021597956.2 mRNA downstream 2519 73852084 ~ 73867970 (-) False LOC110520571
XM_036975153.1 mRNA downstream 110755 73739671 ~ 73759734 (-) True zgc:92313
XM_036975135.1 mRNA downstream 173127 73661996 ~ 73697362 (-) False LOC110520558
XM_036975143.1 mRNA downstream 173127 73661996 ~ 73697362 (-) False LOC110520558
XM_021597963.2 mRNA upstream 6157 73883541 ~ 73889222 (-) True LOC110520575
XR_005051379.1 mRNA upstream 83032 73960416 ~ 73973401 (-) False LOC110520576
XR_005051378.1 mRNA upstream 86219 73963603 ~ 73973401 (-) False LOC110520576
XR_005051411.1 mRNA upstream 96068 73973452 ~ 73973615 (-) True LOC118964355
LOC118964353 mRNA upstream 96946 73974330 ~ 73974439 (-) True LOC118964353
TU335922 other downstream 60893 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 95190 73773154 ~ 73775299 (-) False G296102
TU335928 other downstream 95190 73773154 ~ 73775299 (-) True G296102
TU335855 other downstream 237453 73632038 ~ 73633036 (-) False G296043
TU336013 other upstream 335 73877719 ~ 73880371 (-) True G296166
TU336000 other upstream 93098 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 361803 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 2083163 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 2177737 76055121 ~ 76057006 (-) True G298131

Expression Profile