RNA id: TU336010


Basic Information

Item Value
RNA id TU336010
length 845
RNA type TUCP
GC content 0.54
exon number 1
gene id LOC110520572
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73870489 ~ 73877576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGAGCCAGACGGACAAAGATAAACTCACCGGTAGTCTGCTCTCCTCTGAGTCCACCTTTCTACCTGTCACCTCTGACCCCGCCCACTCTGACAGCGAGGACGAAACTGAGACATTTGAGCCTGACTCGCTGGCGCCTGAACACCCCATCCGTCCCAAAAAGACCTCTCCTGAAAAGACCCAACACGCACCCTTGGAAAGGGAGATGGAAATGGAGAGCGAGGTGGATAATAGAGTGAAGGAGGTAAAAGGAGAAAGGGTGTCGGCTGACAGCCACCTCACCTGTACCTCAACCGTCAGTCCACCTGTGACGGCAGGTGACCAATCACAGACCAATGACAGCGATCCGCTCCAGGGAGCATACTCAAACTGCGTTGCTGCAGAGGTGAGGGTGGGACCTAAGCAGGAAGAGGAAGCGGTGGTGAGATGTGATAGGCTGGGCCGCTGTGAGGCAGACAAGGCAGCCGTCAGGATCCAGGCATGGTGGAGGGGAATGTGGGCTCGGCGTAACCACCCTCTGGCCAAAGAGGTCCGGTGTGAGATCCGCCTGCGCAGGATGCAGGAGCACATAATATTCCTGTCTGGAGAGTTGGAGAGGTACGGAAGAGGCCCCAATCAATCCAAGGGCTGCTTTCTGATTCCCTGCCCTTCTCCAGAAgtgtgcacttgtgtgtgtgaAGAAGTGTGCATGCATTttaaagcattggattggttGCTTTATGGCTGGAGGGAGTTTCCACAATATTCCTCACACCAGTCCTTTCCTTTTAAATACATGAGGGGGAGTGTACGAGTGCACACTTCTCTTAGAAGGGTAGAGAATTGGTATGTAGACACGGACCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336012 lncRNA downstream 17 73872734 ~ 73872956 (-) True G296165
TU336011 lncRNA downstream 403 73872225 ~ 73872570 (-) True G296164
TU336009 lncRNA downstream 1494 73870510 ~ 73871479 (-) False LOC110520572
TU335982 lncRNA downstream 26995 73845287 ~ 73845978 (-) True G296141
TU335970 lncRNA downstream 48309 73824192 ~ 73824664 (-) True G296129
TU336050 lncRNA upstream 55044 73928861 ~ 73929759 (-) True G296193
TU335989 lncRNA upstream 74254 73948071 ~ 73949708 (-) True G296144
TU335990 lncRNA upstream 76108 73949925 ~ 73950171 (-) True G296145
TU335998 lncRNA upstream 76690 73950507 ~ 73951555 (-) False G296152
TU335999 lncRNA upstream 77209 73951026 ~ 73952102 (-) True G296152
XM_021597957.2 mRNA downstream 4598 73852084 ~ 73868375 (-) True LOC110520571
XM_021597956.2 mRNA downstream 5003 73852084 ~ 73867970 (-) False LOC110520571
XM_036975153.1 mRNA downstream 113239 73739671 ~ 73759734 (-) True zgc:92313
XM_036975135.1 mRNA downstream 175611 73661996 ~ 73697362 (-) False LOC110520558
XM_036975143.1 mRNA downstream 175611 73661996 ~ 73697362 (-) False LOC110520558
XM_021597963.2 mRNA upstream 9724 73883541 ~ 73889222 (-) True LOC110520575
XR_005051379.1 mRNA upstream 86599 73960416 ~ 73973401 (-) False LOC110520576
XR_005051378.1 mRNA upstream 89786 73963603 ~ 73973401 (-) False LOC110520576
XR_005051411.1 mRNA upstream 99635 73973452 ~ 73973615 (-) True LOC118964355
LOC118964353 mRNA upstream 100513 73974330 ~ 73974439 (-) True LOC118964353
TU335922 other downstream 63377 73808482 ~ 73809596 (-) True G296100
TU335926 other downstream 97674 73773154 ~ 73775299 (-) False G296102
TU335928 other downstream 97674 73773154 ~ 73775299 (-) True G296102
TU335855 other downstream 239937 73632038 ~ 73633036 (-) False G296043
TU335849 other downstream 239937 73632304 ~ 73633036 (-) True G296043
TU336013 other upstream 3902 73877719 ~ 73880371 (-) True G296166
TU336000 other upstream 96665 73970482 ~ 73971830 (-) True LOC110520576
TU336182 other upstream 365370 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 2086730 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 2181304 76055121 ~ 76057006 (-) True G298131

Expression Profile