RNA id: TU270901


Basic Information

Item Value
RNA id TU270901
length 838
RNA type TUCP
GC content 0.47
exon number 2
gene id G237047
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 23157109 ~ 23189031 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacgaccccattttgctcctcccttcctataggcagaaactcaagcAGGAAATACCTGTGCTCaggtctattcaatgctggtctaaccaatcagaatccatgcttcaCTGAATTCTTcgggaagtgtataggggatgctgttcccactgtgactattaaaacctacccaaaccagaaaccgtggatagatggcagcattcacgctaAACTGAAAGCGCAAGTCACCGTatttaaccacggcaaggtgactgcgaatatggttgaatacaaacagtgaagTTGTTTCCTCTGTACAGTGACAAAGTGGAGTCGtgattcaacggctcagacacaagatgtaTTTGGCAgtgtctacagacaatcatgaaCTACAAAGGGATAACCAGccaagacatttaagcgtgtaaacgctcgcaaggctgccggcatccctagccgcgtcctcagagcatgcgcagaccagctgggtggagtgtttacggacaaatTCAATCTCtcactatcccagtctgctgtccctacttgcttcaagatgtccaccattgttcctgtacccaagaaagcaaaggtaactgaactaaatgacgaTCACCCCGTAGCGCTCACTTCTGTCATCCTGAAGTGCTCTGAggggctagttaaggatcatatcacctcttccttacctgacaccctagacccacttaaatttgcttaccgccccaaaagatccacagatgatgcaatcgccattgcactgcacactgccctatcccatctggacaagaggaatacctacggggcgatagtaatttatttcagttaccttagctttcttgggtacaggaacaatggtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270881 lncRNA downstream 12719 23143960 ~ 23144390 (-) True G237028
TU270886 lncRNA downstream 13205 23143514 ~ 23143904 (-) True G237033
TU270894 lncRNA downstream 34033 23122483 ~ 23123076 (-) True G237041
TU270856 lncRNA downstream 92149 23064754 ~ 23064960 (-) True G237009
TU270841 lncRNA downstream 120406 23036088 ~ 23036703 (-) True G236994
TU270922 lncRNA upstream 1580 23190611 ~ 23191037 (-) True G237068
TU270923 lncRNA upstream 4992 23194023 ~ 23194443 (-) True G237069
TU270934 lncRNA upstream 18719 23207750 ~ 23207980 (-) True G237080
TU270950 lncRNA upstream 46707 23235738 ~ 23235942 (-) True G237092
TU270967 lncRNA upstream 77038 23266069 ~ 23280190 (-) True G237108
LOC118944658 mRNA downstream 14143 23140834 ~ 23142966 (-) True LOC118944658
XM_036972421.1 mRNA downstream 16221 23138636 ~ 23140888 (-) True LOC110514382
XM_021593777.2 mRNA downstream 106077 23037760 ~ 23051032 (-) False LOC110514322
XM_036972416.1 mRNA downstream 106077 23037760 ~ 23051032 (-) False LOC110514322
XM_036972418.1 mRNA downstream 106077 23037760 ~ 23051032 (-) True LOC110514322
XM_036972432.1 mRNA upstream 153092 23342123 ~ 23368891 (-) True LOC110503934
XM_021593864.2 mRNA upstream 217222 23406253 ~ 23495800 (-) False LOC110514498
XM_036972455.1 mRNA upstream 217222 23406253 ~ 23563489 (-) False LOC110514498
XM_036972463.1 mRNA upstream 217222 23406253 ~ 23563489 (-) False LOC110514498
XM_036972471.1 mRNA upstream 217222 23406253 ~ 23563489 (-) False LOC110514498
TU269608 other downstream 582120 22573833 ~ 22574989 (-) True G235881
TU268720 other downstream 1401608 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 1413698 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 1658277 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 1687164 21469661 ~ 21469945 (-) True G234600
TU271267 other upstream 582493 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 991525 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 991525 24180556 ~ 24183964 (-) True G237657
TU271769 other upstream 1332188 24521219 ~ 24521544 (-) True G237832
TU272242 other upstream 1580531 24769562 ~ 24769971 (-) False LOC110515154

Expression Profile