RNA id: TU295408


Basic Information

Item Value
RNA id TU295408
length 1060
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id G259539
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42140069 ~ 42162167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACCACTGATATTTACTGTAAATGAACTAACATGACCTTTGAAAAACTTGCCTGATATGATATCCCTTTATATGAGGAATTAGCAGAGGACTCTTCAATCCATTAGATTGAATTAATCCATCTAAATCTCAATTCATGTTAGGGATCATTAGTTGTGTCCCTTGATGACCTTTAACATTTTGCCTAGTTGACCAAACATGGATAAGAAAAGAAGCTGCTGTATTTCTATCCACATGATGGCAGCAGCATGTCCAAGTGTAGGTGGGggaaaaaataacatttattcaGTGCCTCTGAGAAATGATACAGCACATACTTGTTACAAAAACACTGGTTCAGTCAAGACCACAGTAGCACTATAGCCAAAAAAAAGTCTCAGAAATTCAACAACACGAGGCTAATACAAAGTGTCTTAATAAAATGCATCTGGGTTCCCTCAACCATCACAGTCAGCAGTCACTTCAATAGAAATTAGCGCACAATTGAACTCAAAACATTTTCAAACCCCAATGTTAGGTTATTATGACCTGGATTTTCTTTTTTGATTAACACCTTCCATCAAATTTGTCTCAACCTCTGCTTTACAGACATTATAACTTATGTCTTAGATATAAACGTGGCACATTTTGACGAGGACATATACAAGTTATCTTCACCAAAAGTGAAATGTCAAGTAAACAGAAAAGTTCTATATGGAATTGAAATAAATCATATTTATAAACACATTTAACATATTTGTGACCTGGTACATAACATTATAGCAATATTCTTTCTAAGAACCATCATATCTTATCTGagttttatttacttattttgtaaaaattattttaccccttttttttctcctcaatttcatggtatccaattggtagtagttacagtcttgtctcatcgctgcaactcccgtacagactcgggagaggcgaagttcGAGAGTCAtgcttcctccgaaacacaacccaaccctgaagccagtcgcaccaatgtgtcggaggaaacaccgtacacctagcaacctggtcagcgtgcactgcgcccggtgtttccttcgacacattgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295360 lncRNA downstream 16757 42089844 ~ 42123312 (-) True G259496
TU295205 lncRNA downstream 221764 41905291 ~ 41918305 (-) False G259344
TU295203 lncRNA downstream 221764 41914427 ~ 41918305 (-) True G259344
TU295186 lncRNA downstream 298797 41841005 ~ 41841272 (-) True G259328
TU295165 lncRNA downstream 338987 41800586 ~ 41801082 (-) True G259307
TU295435 lncRNA upstream 34559 42196726 ~ 42198137 (-) True G259563
TU295496 lncRNA upstream 65385 42227552 ~ 42227791 (-) True G259595
TU295501 lncRNA upstream 71275 42233442 ~ 42233681 (-) True G259600
TU295515 lncRNA upstream 107063 42269230 ~ 42270124 (-) True G259614
TU295482 lncRNA upstream 117378 42279545 ~ 42282518 (-) True LOC110519979
XM_021596894.2 mRNA downstream 1735034 40396378 ~ 40405035 (-) True LOC110519968
XR_005039881.1 mRNA downstream 1857193 40279614 ~ 40282876 (-) True LOC118944520
XM_036974094.1 mRNA downstream 2014806 40111206 ~ 40125263 (-) False LOC110519967
XM_036974106.1 mRNA upstream 81409 42243576 ~ 42291605 (-) False LOC110519979
XM_036974107.1 mRNA upstream 81409 42243576 ~ 42291605 (-) False LOC110519979
XM_036974108.1 mRNA upstream 81409 42243576 ~ 42291605 (-) False LOC110519979
XM_036974109.1 mRNA upstream 81409 42243576 ~ 42291605 (-) False LOC110519979
XM_036974110.1 mRNA upstream 81409 42243576 ~ 42291605 (-) False LOC110519979
TU295117 other downstream 372481 41763817 ~ 41767588 (-) True G259259
TU292362 other downstream 1804629 40335210 ~ 40335440 (-) True G256632
TU292346 other downstream 1817171 40322506 ~ 40322898 (-) True G256616
TU291727 other downstream 2321089 39818648 ~ 39818980 (-) True G256016
TU291595 other downstream 2494326 39644571 ~ 39645743 (-) True G255911
TU295466 other upstream 123463 42285630 ~ 42293169 (-) False G259576
TU295453 other upstream 126825 42288992 ~ 42290036 (-) False G259576
TU295465 other upstream 126825 42288992 ~ 42327995 (-) False G259576
TU295472 other upstream 128092 42290259 ~ 42319385 (-) False G259579
TU295474 other upstream 130060 42292227 ~ 42295780 (-) True G259579

Expression Profile