RNA id: TU295461


Basic Information

Item Value
RNA id TU295461
length 598
RNA type TUCP
GC content 0.46
exon number 2
gene id G259576
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 42285630 ~ 42327995 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCCTCCCGAGGCCTTTCATGTTGGATTTATTTCGTACCTCTGTAGGAATGTTCTCTATGATAGCACTCAGTCCAATGCACACATTGACACTTTCTTTGAATGGTTGTTTGAGATTAGGGAAAGGGATGACTGTCATGTGAAGGAAGCAGCTTTGTCCTGTTTTTCCCTTACCTATGCAtcatttaataaaacattttttttctgaacATTCACATTCTCTAGTTGAGAGTCAGGCTCCCAGGAGGGATGTTGTGTTCTTGCTGGATGGATCTGATGGCACTAGGAGTGGATTCCCAGCAATGCGGGACTTTGTTCAAAGAGTAGTGGAGACACTCGGTGTGGATGAGAACAAAGATCGCGTGGCTGTGGTCCAGTACAGTAGAGATCCAGCCGCCCAATTCTATCTGAACACATACACAACAAAAGGAGAGATTCTCAACACTGTACAAGGTCTGAGACACAAAGGTGGGAGACCTCTCAACACTGGAGCAGCTCTCCAGTACGTGAGAGACAATGTCTTGACTGCCTCCTCCGGAAGTCGACGCACTGAAGGTGTTCCACAGTTACTGATTCTGCTGAGTGGTGGAAGGTCCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295473 lncRNA downstream 2819 42290259 ~ 42302509 (-) False G259579
TU295475 lncRNA downstream 7543 42290259 ~ 42297785 (-) False G259579
TU295457 lncRNA downstream 13228 42291363 ~ 42292100 (-) False G259576
TU295482 lncRNA downstream 22810 42279545 ~ 42282518 (-) True LOC110519979
TU295515 lncRNA downstream 35204 42269230 ~ 42270124 (-) True G259614
TU295587 lncRNA upstream 106021 42433201 ~ 42433418 (-) True G259685
TU295594 lncRNA upstream 112100 42439280 ~ 42439506 (-) True G259691
TU295603 lncRNA upstream 120107 42447287 ~ 42447514 (-) True G259700
TU295683 lncRNA upstream 259104 42586284 ~ 42590360 (-) False G259779
TU295684 lncRNA upstream 259104 42586284 ~ 42590360 (-) True G259779
XM_036974106.1 mRNA downstream 13723 42243576 ~ 42291605 (-) False LOC110519979
XM_036964861.1 mRNA upstream 2459 42329639 ~ 42334795 (-) True LOC110519978
XM_036974111.1 mRNA upstream 7727 42334907 ~ 42339654 (-) False LOC118936375
XM_036974112.1 mRNA upstream 10300 42337480 ~ 42339654 (-) True LOC118936375
XM_021596918.2 mRNA upstream 12730 42339910 ~ 42364268 (-) True LOC110519982
XR_005039884.1 mRNA upstream 127944 42455124 ~ 42457706 (-) True LOC110520683
TU295484 other downstream 1683 42298242 ~ 42303645 (-) False col6a3
TU295486 other downstream 4142 42295880 ~ 42301186 (-) False col6a3
TU295487 other downstream 6407 42295880 ~ 42298921 (-) False col6a3
TU295474 other downstream 9548 42292227 ~ 42295780 (-) True G259579
TU295466 other downstream 12159 42285630 ~ 42293169 (-) False G259576
TU297567 other upstream 1662344 43989524 ~ 44031505 (-) True G261580
TU299080 other upstream 2682992 45010172 ~ 45012249 (-) True G262993
TU299078 other upstream 2772160 45099340 ~ 45104263 (-) True LOC110520012
TU299385 other upstream 3209152 45536332 ~ 45537542 (-) True G263274
TU302286 other upstream 5272038 47599218 ~ 47599815 (-) True G265988

Expression Profile