RNA id: TU307378


Basic Information

Item Value
RNA id TU307378
length 2928
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G270567
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 51529449 ~ 51532544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTCTGCATGTTCTGTTGCACTGAAATATATACACCTTATACACAGAGCTGGACTGATCGATACCTGAGGGAGAGGTGGTACTGTAGTTTAGAGTTATGGGAAGTAGACTGGTGATAACATTATGCCCCAAAACTTTGAACATATATCTCCTAAGCTACTGTAACAGTTGTATTGACAGTTGAGAGATGTAACAGGAGCTGTAACAGAGGTATCGAACACAGAAGCATCATGGGACAGTAAGTATTATTAAAACGGGGCCCTCTTAACTATTACTGTAACTAGGAGCAGATTCTCATGGGACCCTCATCTCTTCAGCTTTACAAATAGCTATActttaactaaccctaacccatttttTTCTGGAGTGAGAAATAAAACACGAGTTCCTCGTCATTTTAACAGAGGGCAGATTTATGTGAATCTTACTGAGTCAGTGTCCCTCACTACTTGCCAATCAAAACCTAATACTACTGAGGAAGTGTTGTctaagttcacacacacacacacacacacacaatgcaatgaAGCTGCACTCTGTCTGTTAAGGCTTGCATGAATCTGTCCTGGTTAAAAAACATTtaacgcaaaaaaaaaaagaacaacaaAGGGACATCAACATAGGGAGAAAAGATGGTGACGGTGAAACAGAATGGTGTTCTTTAGACTAGTGATGACGTGTTGCTATCATGTTTGCATGTTGCGCTGACAAGCCCAGTTATAAAGGTGTCATCCGCCTCCCTATACACCAACCCCTCAGATGACCACAGATGGGGCGGGTCACCATTAAGACTACCATCATAGAGTGTAAATAACTGTCCAATGAGTAGAGATAAACAATGTAACATGTTTTAAAAGCAAATGCAGTTGCTGTGCCGTACAATGAATTGCAGCAaaataaaatgagaaaaataaataaaaaataagaactACTCCTTCCTGTGCAATTCAGGACCCAAAAGTAGCTTTAGTAACATCATGTTACTCATAGGTGGCTACTGATAATAAGATCCTATTGATCCTCGCATCTCAACATATACCTTGGCATAATAAACCCATAAACATGTCAGTACTACCCCGGAGAGAACTCAACTACCCACAGTGCACCATTATGGATGAAGGGTTGGTGGAGTGTTTCTGAATAGAAGactgtagtggagggagagatgaggtggGGAGGGAACCTAGCAACAAATCAAACAATCATCCTAGCCTAAGCAAACTTGAATTAAGGCAAACATTACTACAGTCTAGAGCTGAAGAGCAGAATCAAATGTCCTTTCAGTAATGAGGTTACAAGTGGACAGTAGTAAGTGCTGGGTTTCCGTACACTAATGccactaccaaccccatcactgTTTTAGGAGAGAAGGGGATGGCAGTGAGACCAGCAGCTCTCAGCTTTGATCATTAGAACAACTCATTCATTCAGTAAGTACTGCATTTCAATTATAAAGGGTAGCTGGGGGTTATCATTGTCTGTTTTGACTGGAATTGGTGGTTAAGGTTATTATAAGAGGTCACACTAACACTGAGGGTGGTTTAGCATGTTTAAACCAGAGCAGAGATGGCAGGAGAACAAGTTCATAGTTCACTCGGGAACTGGCATGGTAATATGTGTGCAGATATCTACTGGTGAGCAAGCAATGGAGAATGCTGTAAAACCTACATACATAAAATAATTAGGGTCAGAACCCGGGGGCGTTGGAATAGTGGTGTGGAATATCATGGCAATGTTAATAAGTTACCATGAAGTTAATGAATACAGAGCCCTTGCTGTAGTCTTAACACACAGAACCCTGACTCAGTATTTAAAACACTGGAAGTCCCATCTCTGCTGTTGAACATAGCTCTGTTAAAAATAAGTCCCTAAGTAATATTCAACAGCAGCCAAACTCTATCTGACTGTCTTGGTAAGAATGCATAGACTTATAGAATCATAGAGCCACCCCATTATATTTGCTCATGAATAAAAATGGTTCCCACAACAGAGAGATGAAGCACAGTGAAAATAAACACCTTTTTTGCTCAGAGGTAAAAAGCAAAGCGGAAACCTGGCAGGGCTCCACACTGACCGTTTTGTACAGTGAGCATACGTGTGCCTAAGTTGAAGAAAGTACACAAAGAAGGagcacaatgaaaaatatttgaAGGTAACAAGCCGTTTTCTTTGTAGTAATGGTGCAATTACGACGGTCATGAATTTGCGCTCTGTGTATTCCCCATGGCACTCAGGGGCTGCGGTACAGTGAAATCATTGCAACAATTATCATCTGGGTGATTTTTTTTCTAGGCGGACAGCAACATATTTAGGCGCGTAGGTGAGGAAAATGGTCGCATTGTAGAGCTCTGCCAGGCTTTTCGGTAGAACGAGGGGgagatatactgtactgtatgttacaaGGTGAACACTGAAGTAACACCTCAACCTCAAATCAAAAACTAGATTGAAAAGAAAGTTATGGAAAGGAGAGCTGCTGATAGGCTTGGTTCCTAGGGTCAAAGGAGTCGAAGAGTGCGAGGTGGCGGGGGGACTGGGGGGGTTGGATAAGGGGGCAAGGAGCATGTCCACAGCAGTACCTCCTGTTCTCAGTCCTGCCCTCTCCTACTCCACAGAGAGCTGGCTGCAGATGgtctcccttttctctctacaCTCCTCAAATGGTCAaacccctccttctcttccttccctcATCGTCCAGATCCATCTCTGGTGTAAATCggtttgacccccccccccccccggagtgCTTACTCGCACACACCTCAGGACAACAGAATAGGTGGAAGGGGACCGCAGGAGGACCGTACGAGAGCGACCGCGGTCGGGAGGGAGAGTTCTAGTTCTGTTTCTTAGCCCCCTCGTCGCCGTAACTGGAGCCCGTCTTCTTTATCTCGGTGACACCGATCAGGCGACGGATGGCTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307436 lncRNA downstream 30712 51490594 ~ 51498737 (-) True G270611
TU307413 lncRNA downstream 57120 51471899 ~ 51472329 (-) False fgf9
TU307401 lncRNA downstream 73483 51455767 ~ 51455966 (-) True G270582
TU307390 lncRNA downstream 87872 51441320 ~ 51441577 (-) True G270571
TU307074 lncRNA downstream 109676 51419434 ~ 51419773 (-) True G270286
TU307447 lncRNA upstream 5245 51537647 ~ 51538128 (-) True G270621
TU307448 lncRNA upstream 5934 51538336 ~ 51538639 (-) True G270622
TU307451 lncRNA upstream 10401 51542803 ~ 51543313 (-) True G270625
TU307452 lncRNA upstream 13284 51545686 ~ 51546420 (-) True G270626
TU307453 lncRNA upstream 14159 51546561 ~ 51546836 (-) True G270627
XM_036974557.1 mRNA downstream 50939 51472148 ~ 51478510 (-) False fgf9
XM_021583046.2 mRNA downstream 58773 51464211 ~ 51470676 (-) True LOC110504232
XM_021597292.2 mRNA downstream 139867 51276921 ~ 51389582 (-) True LOC110520166
XM_021597293.2 mRNA downstream 139868 51276921 ~ 51389581 (-) False LOC110520166
XM_021597286.2 mRNA downstream 393988 51130633 ~ 51135461 (-) True cldn10b
XM_021597298.2 mRNA upstream 18295 51550697 ~ 51559339 (-) False LOC110520170
XM_036963750.1 mRNA upstream 64531 51596933 ~ 51619474 (-) False il1rl1
XM_036963761.1 mRNA upstream 64531 51596933 ~ 51619476 (-) False il1rl1
NM_001281424.1 mRNA upstream 73314 51605716 ~ 51619142 (-) False il1rl1
XM_036974559.1 mRNA upstream 98387 51630789 ~ 51680912 (-) False LOC110520172
TU307414 other downstream 55310 51473324 ~ 51474139 (-) True fgf9
TU306786 other downstream 400139 51128440 ~ 51129310 (-) True LOC110520160
TU306341 other downstream 1086577 50440205 ~ 50442872 (-) True LOC110520139
TU305117 other downstream 1627911 49900173 ~ 49901538 (-) True LOC110520121
TU305027 other downstream 1657804 49867217 ~ 49871645 (-) True LOC110520119
TU307458 other upstream 64997 51597399 ~ 51599898 (-) False il1rl1
TU307459 other upstream 65533 51597935 ~ 51600230 (-) True il1rl1
TU309282 other upstream 1175781 52708183 ~ 52708816 (-) True LOC110520182
TU309646 other upstream 1717524 53249926 ~ 53251084 (-) True G272713
TU311493 other upstream 3147516 54679918 ~ 54682805 (-) True G274344

Expression Profile