RNA id: TU315082


Basic Information

Item Value
RNA id TU315082
length 1885
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G277576
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 57220587 ~ 57222617 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTTAGGTCATCACATCAATGTGAAAGGTTTCAACAGCCAATTTAAAGAAACAAGACTAGTGATCTTCAAATGTGAAAGCAGTGAGACGATAATATGCACAAATATATTTGTATCTTTTGTCAGACTCCGTGCTCCacacaactaactaactaaaGCGCCTCACCTCATACCCCCATCTCTCGCTCATGAGACCTCGATGAATGACTTTCTCTTTCAGGGACCAGAGAACCCATCTGATCTCCACAAGTGAGTTTCATCcccttcccctctgtctccctaccCTCTTCTCagcctctcacctccctcctctcagccCCTCACCCCACTTCTCTCCTGACTCTCACCCCACTCCCCTCCCAGGAAATAAAAACAGCCACCTCTACATCCTCCAAAAGTAGTTTCTAAACCTTCTTTCCTCAGAGATAGAGGGATGAATGGTGAGTAGATCTTTGCCCTACAGACAGTTCTCATTCTATTGATTTGCTGTATCTATTGTCTGACTCCAGTACCACTCCTTTCTTCTCAGCTATAATGCTGTTAAATTGTTTCATTCTAATCTATTGTACAATTCCCTCTGTGAAGGGAAACATCCATCGTCTGTGTGCACTACTACCACTTGCCAGTGAGAGATGTTTTGTTCATTAGGGCTCATTGAAGCAAAACAATTAGCAACAGAAAACAAAAGGCGCTTCTTATTGGACATGTCCAGGTAGTCCTTCtccatttcagtttttatttttcttGTTTTGTGCCTACTGAACACTACCCAGTTCTGTACAATTACCTTCCTTGCACCTGTAGTACCAGGTTCTACCCATAGGAGTTCAGGTGGCAGAGAGTATTGGCACCTTCTGTATCAATCCACAATGTGCTGTCTCTCCCACTACAACCCAGGAACCCAAACTGAGACCACACCACGTCCTGTAATGCACACAATACAGTTCCAATTACTAACACTGTAATTATCAATCATACTGTATATTCATGGCAGCAATACATCCCGAGGGAAACCTCCATTGTCACTAGACACAGGTGAAAATGCATGCCCATTCACCATCTCATGGGTTGCTTAATAGGCAGTGCAATGACTGTCAACAAAGGTTGTACCCCAAATGACACCTTATGCCCTATATATtgtactacttttcaccagacccctatgggccctggtcaaaagtagtgcactatgtaggaataGGATGCCAATAGGGACAGACACTCTCTAGAGGAAACAAGATGTTTGTTGTCTGTAGGCTCTTTGTCAAACCATTTGCGCTGTCAATCATTTCCTgttaaaaagcaacaaaaaaaagtggAGTTTCTGCCCAGCACCCTGGATAATGAAACCATTACCATGTTCAGGCAACTGTAAATGATAGACTTCACAATCTTGGCTTTCAGCAACTTTTAAATGGCGCTATTCATCATTTAAAAAGGCATCTGACTGCCTGTCTTTAAGGCATGAATTTCGTCAGACCTGTGAAAAAATGCAGGCCGCCCCTTAAGCATCTATTATCATTAAAGGAAAATGAATTAATGGAGGCCAGCTCGAACTAGAGTGGACGTTCAAGGCCTTGACTGCCCGAGGACTCAAAAGGAAAAGGGCTGCCATTGAAAAGTTCCACTGAAAATGTCTGTCCTATCACGACAGGATATCatcaaaaagagagagaatgtctGCTGATTGCTAAAGTTGTCACTTTTGATTTGTACGTGTCTGTATCAATTTAGGCTTAGGCTAGTTAGCTTCTCCAGGATCGCTGATGGGGCAAAGGAATTCATTAAAGATACCCATGCATCTGTTTTACATTTACATGTTGGTGTGATACTGTCAGAACTGGACTCAATTTCATTTTAATTCAattgatgaataaataaaaaat

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU314744 lncRNA downstream 11389 57208933 ~ 57209198 (-) True G277259
TU314730 lncRNA downstream 30643 57188664 ~ 57189944 (-) True G277245
TU314649 lncRNA downstream 166305 57053985 ~ 57054282 (-) True G277168
TU314588 lncRNA downstream 173732 56968036 ~ 57046855 (-) True G277110
TU314475 lncRNA downstream 318312 56867210 ~ 56902275 (-) True LOC110520270
TU315112 lncRNA upstream 44319 57266936 ~ 57267196 (-) True G277604
TU315093 lncRNA upstream 109951 57332568 ~ 57335897 (-) True LOC118963713
TU315156 lncRNA upstream 126955 57349572 ~ 57349815 (-) True G277647
TU315157 lncRNA upstream 127778 57350395 ~ 57350781 (-) True G277648
TU315158 lncRNA upstream 128764 57351381 ~ 57351609 (-) True G277649
XM_021597462.2 mRNA downstream 13629 57143435 ~ 57206958 (-) True slc49a4
XM_036974745.1 mRNA downstream 303174 56867209 ~ 56917413 (-) False LOC110520270
XM_021597452.2 mRNA downstream 375934 56832398 ~ 56844653 (-) True LOC110520269
XM_036974743.1 mRNA downstream 376776 56832398 ~ 56843811 (-) False LOC110520269
XM_021597448.2 mRNA downstream 552996 56652369 ~ 56667591 (-) True LOC110520265
XM_021597463.2 mRNA upstream 10016 57232633 ~ 57260239 (-) True LOC110520276
XM_021597464.2 mRNA upstream 49856 57272473 ~ 57291527 (-) False si:dkey-91i10.3
XM_021597465.2 mRNA upstream 98621 57321238 ~ 57330396 (-) True LOC110520278
XR_005050883.1 mRNA upstream 110001 57332618 ~ 57336298 (-) False LOC118963713
XM_036964539.1 mRNA upstream 187364 57409981 ~ 57414314 (-) True LOC110505369
TU312498 other downstream 1809100 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 1809100 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 2101375 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 2537782 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 3969503 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 48165 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 180367 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 361769 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 5491958 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 7746932 64969549 ~ 64970755 (-) True G286522

Expression Profile