RNA id: TU325332



Basic Information


Item Value
RNA id TU325332
length 430
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G286951
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65231434 ~ 65231863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctaccttccatgttcttcatgatgctctctacgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU325305 lncRNA downstream 39928 65190969 ~ 65191506 (-) True G286929
TU325301 lncRNA downstream 44918 65186271 ~ 65186516 (-) True G286925
TU325296 lncRNA downstream 57153 65174001 ~ 65174281 (-) True LOC110520397
TU325297 lncRNA downstream 57819 65173339 ~ 65173615 (-) True G286921
TU325291 lncRNA downstream 64868 65164639 ~ 65166566 (-) True G286918
TU325333 lncRNA upstream 183 65232046 ~ 65232660 (-) True G286952
TU325303 lncRNA upstream 7205 65239068 ~ 65240985 (-) True G286927
TU325335 lncRNA upstream 12853 65244716 ~ 65244984 (-) True G286954
TU325340 lncRNA upstream 18368 65250231 ~ 65250498 (-) True G286959
TU325341 lncRNA upstream 19780 65251643 ~ 65251849 (-) True G286960
XM_036965070.1 mRNA downstream 48780 65173958 ~ 65182654 (-) False LOC110520397
XM_021597684.2 mRNA downstream 81263 65146520 ~ 65150171 (-) True c3h2orf76
XM_021597681.2 mRNA downstream 122635 65106729 ~ 65108799 (-) True c1ql2
XM_021597676.2 mRNA downstream 239281 64987753 ~ 64992153 (-) False en1a
XM_021597678.2 mRNA downstream 239283 64987753 ~ 64992151 (-) False en1a
XM_021597696.2 mRNA upstream 89031 65320894 ~ 65326014 (-) True LOC110520402
XM_021597699.2 mRNA upstream 94299 65326162 ~ 65329900 (-) False gjb8
XM_021597700.2 mRNA upstream 94299 65326162 ~ 65330529 (-) True gjb8
XM_036974947.1 mRNA upstream 98969 65330832 ~ 65357384 (-) False cryl1
XM_021597697.2 mRNA upstream 98969 65330832 ~ 65362594 (-) False cryl1
TU324969 other downstream 155449 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 176223 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 201698 65014259 ~ 65029736 (-) True G286580
TU324819 other downstream 260679 64969549 ~ 64970755 (-) True G286522
TU322065 other downstream 2516257 62714575 ~ 62715177 (-) True G284018
TU325334 other upstream 3317 65235180 ~ 65235908 (-) True G286953
TU325373 other upstream 66344 65298207 ~ 65300417 (-) True G286985
TU325443 other upstream 214962 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 347928 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1610808 66842671 ~ 66842881 (-) True G288578

Expression Profile