RNA id: TU325367



Basic Information


Item Value
RNA id TU325367
length 367
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G286979
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65290732 ~ 65304498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ataaagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcaagctgttttgcaaggaggaatgggaaaaaattttagtctctcaatgtgcaaaactgatagagacatacgccaagtgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcagtttttgagttgttaaaaaagtttgaaatatccaataaatgtcgttccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU325342 lncRNA downstream 37944 65251989 ~ 65252788 (-) True G286961
TU325341 lncRNA downstream 38883 65251643 ~ 65251849 (-) True G286960
TU325340 lncRNA downstream 40234 65250231 ~ 65250498 (-) True G286959
TU325335 lncRNA downstream 45748 65244716 ~ 65244984 (-) True G286954
TU325303 lncRNA downstream 49747 65239068 ~ 65240985 (-) True G286927
TU325401 lncRNA upstream 33675 65338173 ~ 65339895 (-) True G287005
TU325442 lncRNA upstream 141581 65446079 ~ 65446302 (-) True G287041
TU325444 lncRNA upstream 143570 65448068 ~ 65448417 (-) True G287043
TU325474 lncRNA upstream 222450 65526948 ~ 65532451 (-) True G287067
TU325492 lncRNA upstream 250032 65554530 ~ 65554731 (-) True G287081
XM_036965070.1 mRNA downstream 108078 65173958 ~ 65182654 (-) False LOC110520397
XM_021597684.2 mRNA downstream 140561 65146520 ~ 65150171 (-) True c3h2orf76
XM_021597681.2 mRNA downstream 181933 65106729 ~ 65108799 (-) True c1ql2
XM_021597676.2 mRNA downstream 298579 64987753 ~ 64992153 (-) False en1a
XM_021597678.2 mRNA downstream 298581 64987753 ~ 64992151 (-) False en1a
XM_021597696.2 mRNA upstream 16396 65320894 ~ 65326014 (-) True LOC110520402
XM_021597699.2 mRNA upstream 21664 65326162 ~ 65329900 (-) False gjb8
XM_021597700.2 mRNA upstream 21664 65326162 ~ 65330529 (-) True gjb8
XM_036974947.1 mRNA upstream 26334 65330832 ~ 65357384 (-) False cryl1
XM_021597697.2 mRNA upstream 26334 65330832 ~ 65362594 (-) False cryl1
TU325334 other downstream 54824 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 214747 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 235521 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 260996 65014259 ~ 65029736 (-) True G286580
TU324819 other downstream 319977 64969549 ~ 64970755 (-) True G286522
TU325443 other upstream 142327 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 275293 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1538173 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2322334 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 2579254 67883752 ~ 67886232 (-) True G289653

Expression Profile