RNA id: TU329018


Basic Information

Item Value
RNA id TU329018
length 517
lncRNA type intronic
GC content 0.44
exon number 2
gene id G290144
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68285153 ~ 68285759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcagatccaataccacatttacatgagcagggatactggagtgatggaggtagatatgtatagaggtaaggtgacagggatactggagtgatggaggtagatatgcatgttaggtgacagggatactggagtgatggaggtagatatgtatagaggtaaggtgacagggatactggagtgatggaggtagatatgcatgttaggtgacagggatactggagtgatggaggtagatatgtacagaggTAAGGTGaaagggatactggagtgatggaggtagatatatatgttaggtgacagggatactggagtgatggaggtagatatgcatagaggtaaggtgacagggatactggagtgatggaggtagatatgtataggagaaaggggagagggatactttagtgatggaggtagatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329010 lncRNA downstream 16486 68268453 ~ 68268667 (-) True G290137
TU328921 lncRNA downstream 59819 68223448 ~ 68225334 (-) True G290064
TU328832 lncRNA downstream 191395 68093038 ~ 68093758 (-) True G289985
TU328661 lncRNA downstream 227868 68056985 ~ 68057285 (-) True G289841
TU328656 lncRNA downstream 234624 68050232 ~ 68050529 (-) True G289836
TU329029 lncRNA upstream 21291 68307050 ~ 68307310 (-) True G290154
TU329030 lncRNA upstream 21642 68307401 ~ 68307710 (-) True G290155
TU329038 lncRNA upstream 32514 68318273 ~ 68318828 (-) True G290163
TU329068 lncRNA upstream 79781 68365540 ~ 68366876 (-) True G290190
TU329067 lncRNA upstream 82385 68368144 ~ 68370857 (-) True G290189
XM_021597804.2 mRNA downstream 31912 68227272 ~ 68253241 (-) False LOC110520466
XM_021597805.2 mRNA downstream 31912 68227272 ~ 68253241 (-) False LOC110520466
XM_021597806.2 mRNA downstream 31912 68227272 ~ 68253241 (-) False LOC110520466
XM_021597808.2 mRNA downstream 31912 68227272 ~ 68253241 (-) True LOC110520466
XM_036975019.1 mRNA downstream 76479 68206330 ~ 68208674 (-) False si:ch211-214p13.7
XM_021597813.2 mRNA upstream 169702 68455461 ~ 68460579 (-) False LOC110520470
XR_002472988.2 mRNA upstream 298713 68584472 ~ 68586742 (-) True LOC110520471
XM_021597817.2 mRNA upstream 974744 69260503 ~ 69277276 (-) False LOC110520474
XM_036975027.1 mRNA upstream 1094708 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 1310078 69595837 ~ 69614655 (-) True LOC110520477
TU328904 other downstream 76758 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU328453 other downstream 398921 67883752 ~ 67886232 (-) True G289653
TU328494 other downstream 651660 67626832 ~ 67633493 (-) True G289678
TU327202 other downstream 1442272 66842671 ~ 66842881 (-) True G288578
TU325523 other downstream 2704658 65579791 ~ 65580495 (-) True G287112
TU329440 other upstream 293344 68579103 ~ 68580707 (-) True G290542
TU329467 other upstream 340573 68626332 ~ 68647620 (-) True G290567
TU329515 other upstream 424608 68710367 ~ 68717385 (-) True G290598
TU329520 other upstream 436049 68721808 ~ 68724914 (-) True G290602
TU329646 other upstream 560852 68846611 ~ 68850854 (-) True G290713

Expression Profile