RNA id: TU329654


Basic Information

Item Value
RNA id TU329654
length 1512
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G290714
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68851878 ~ 68853389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttaatgaagctgccagttgaggacttgtgaggcgtgtttctcaaactagacactctaatgtacttgtcctcttgctcagttgtgcaccagggcctcccactcctctttctattctggtaagAGCCTGTtcgcgctgttctgtgaagggagtaggacacagctttgtacgagatcttcagtttcttagcaatttctcacatggaatagccttcttttctcagaacaagaatagactgacgagtttcagaagaaagttatttgtatctggacattttgagcctgtaatcaaccccacaaatgctgatgctccagatactcaactagtttaaagaaggccagttttattgcttctttaatcagaacaacagttttcagctgtgctaacataattgcaaaagggttttctaatgatcaattagctttatTAAATTATACATTTGGAATAACTAACAGAACATGCCATTGGAatgacggttgctgataatgagactctgtacgcctatgtagatattccataaaaattctgctgtttccagctacaatagtcattcacaacgttaacaatgtctacactgtatttctgatcaatttgatgttatttaaatagacaaaaaatgtgcttttctttcaaaaacaaggacatctctaagtgaccccaaacttttgaacggtagtgtagataGTGAATAATCAGCTCACTGTGATAAAAACAGTTTAGTCTGAAGTTAGATTCTAGAGCCAACATGTCTGCTGATTCTGAGTGTCTCTGTTTGTTGTGTCAGAATGGCTTTGATACAGTACAACTGCACTGTAGTATGCTGCAGAGAGACCGAGTCGGAACAGAGAATTTACAgacattttccatgggaagttaagccctggaatttggagaactttgcttaaattcatcaaaaaagttagctaTTAACAGTGAAacttttttttgtgggatacacataaggcaattctaggtcttgtggcatctTTACAAGAAAATggcacgggcactatctgatgtgtggagacatttcactgcaactaatgtagaaggaaaagctgtgtacatttgcacactctgacaaaagtccctctctctatttgaggtgaaaatgatgaatcagacaccttatcgatagcaacagctcatggtcctcctggaatcagaagtttgtttgactcaatggaggaacgtagtcagagaaatgctgatgaatgtcttgctcgagctgtgtatgcaactggttcacctctgatgctcacaggcaatgtgtattggaagagatttctgaatgttcttcgcccagcatacacccctccaaccagacatactttatctactaatttgctggatgcagagttcaacagagttcaagtgaaggtcaagcaaaacatagagaaagcagactgttttgcaatcatctctgatggatggtcgaatgtttgtgggcatggaataattaactacatcatctccacccctcaaccagtattctaaaATAGCACAGATACaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU329625 lncRNA downstream 6815 68844786 ~ 68845063 (-) True G290706
TU329605 lncRNA downstream 28607 68823052 ~ 68823271 (-) True G290686
TU329602 lncRNA downstream 31008 68820595 ~ 68820870 (-) True G290683
TU329595 lncRNA downstream 34804 68816037 ~ 68817074 (-) True G290676
TU329593 lncRNA downstream 36240 68815330 ~ 68815638 (-) True G290674
TU329657 lncRNA upstream 56 68853445 ~ 68853914 (-) False G290715
TU329656 lncRNA upstream 243 68853632 ~ 68854358 (-) False G290715
TU329658 lncRNA upstream 243 68853632 ~ 68853914 (-) False G290715
TU329659 lncRNA upstream 629 68854018 ~ 68854358 (-) True G290715
TU329929 lncRNA upstream 61365 68914754 ~ 68915505 (-) True G290954
XR_002472988.2 mRNA downstream 265136 68584472 ~ 68586742 (-) True LOC110520471
XM_021597813.2 mRNA downstream 391299 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 559128 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 559129 68278572 ~ 68292749 (-) False LOC110520467
XM_021597808.2 mRNA downstream 598637 68227272 ~ 68253241 (-) True LOC110520466
XM_021597817.2 mRNA upstream 407114 69260503 ~ 69277276 (-) False LOC110520474
XM_036975027.1 mRNA upstream 527078 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 742448 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 787877 69641266 ~ 69644739 (-) False LOC110520480
XM_021597828.2 mRNA upstream 796148 69649537 ~ 69675010 (-) False ankrd10b
TU329646 other downstream 1024 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 126964 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 134493 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 204258 68626332 ~ 68647620 (-) True G290567
TU329440 other downstream 271171 68579103 ~ 68580707 (-) True G290542
TU330123 other upstream 402616 69256005 ~ 69256544 (-) True G291138
TU330998 other upstream 1126957 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 1254151 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1866647 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 2174230 71027619 ~ 71040152 (-) True G292919

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU283146 True 253 lncRNA 0.28 1 CI01000058 3052230 ~ 3052482 (-)
tiger barb (Puntius tetrazona) TU283146 True 1177 lncRNA 0.38 2 NW_025048504.1 233490 ~ 234720 (-)