RNA id: TU330581


Basic Information

Item Value
RNA id TU330581
length 1527
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G291542
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69374577 ~ 69377758 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAGTTTAGCTAAACAGACTTCTATGGGCACGGGTAAGTCTCGGGCAAGGAGCGAACAACCACTGTAGACACAGATCTCAGTTATTTAACGTTAGTTATTACAGACAGATCTGGCGTTTCTCCATCTGGAAAATACTACTTACAACACAActgcaattattttattttatatttgtccAAGATAGCTAGCTGCAAAGCTAGCAAGCTAGTTAATTTAAGATATCTCTAGATCCAGTTCGCCAGCAGAGCAGCACTCGCCAAAAAGACAGCAAACCAAAAGCTGCCAACATTGCAGTGGGTGCCGGATAGACAATGGTGGTCCTTCATTCTCGAATATGAAGCCGACGGACCCTAGCAGGAAGGACCAGAGAAAAGTGTTTGCTTAAGGTATGACTTCATATTGTGTAAAATGTAATTCTACTCAAGTTCAGATTGAGATTTAGAGTGCCTGACATGAATTGGAACGTAAAaagcatgagctggcgcacacacAGATAAAATTATATATATGCCTCTcccatctatatatataaactcccagtcatttattgggtaaaacACCAACATTTTGgtatcactgtgccttcttcagggtaatgtcatgaatacttgaaccaggttatgtagacaaacatttcaattagtgcaaccaatgacaatagtgagcAGTGTGACATAATTATTAGGTAAATAAGAATGAATTGAGTGAAACTGTTAAAAGACAATAGTTTACAACATGTTGAATATACTAGACTATTATTATCATATGGCCACATAGTTAGATATTGTACATAATATTAACATACATCATTGTAATAAAACATGTGTTACATTAAATCTTTTGGTTCAACCATAATGCAGAATGgcatcatcaacagggggaacatattGGGTGTACGCTGATAAGCTGTAGAAAGAATATATTCATCTGTAAGAATTGTTCATAAATAACAAGAAGAATTGTTCATAAGAAgggcctgagatcaaagtcaatataCAGACCACTAAGGGTCAATGTTTTTGAATTGGAACTTGAGCAGGCTTATCGGTCTGCACTCAGGTGAAACAACAGATATGGAATGCATTTGTCAACAACGGTTGTGTCAATGAACGCATATTACAAAGGTTGAGAGGTGCGTACACACTTCCAATGTGGCCTACATCTGTTATTAAACTTGAGTGATGACTAAGCCCTAAAGGTTGTGAAACTTCACATGATTAAGCCTATGTCAGTTAAGATCTTGATGCCAAAGCTAATCACTGAATATCCTACTACAAGGACTCAGTCAGGTTGCTAAACTTCTGTATtatatgaacacacacagcagGGGTTGTCAGGGAGAATACTCTAAGCAGTCAGGAAAAGCTCCTATTGTGCTTTTAGTGACTGAATGCAACAAAAAAGAAACAGCACAGCGCCATGATCACTCTGCCTCTCAATCACATAGTTTAGCTTCATGATCACTCTGCCTCTcaatcacatacagtgccttgcgaaagtattcggcccccttgaactttgcgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330613 lncRNA downstream 23535 69345002 ~ 69351042 (-) True G291572
TU330599 lncRNA downstream 49457 69324347 ~ 69325120 (-) True G291560
TU330588 lncRNA downstream 67941 69306427 ~ 69306636 (-) True G291549
TU330585 lncRNA downstream 74486 69299878 ~ 69300091 (-) True G291546
TU330133 lncRNA downstream 88517 69285737 ~ 69286060 (-) True G291148
TU330579 lncRNA upstream 185 69377943 ~ 69379231 (-) True G291540
TU330645 lncRNA upstream 61405 69439163 ~ 69439575 (-) True G291604
TU330663 lncRNA upstream 102751 69480509 ~ 69480944 (-) True G291622
TU330675 lncRNA upstream 121822 69499580 ~ 69507947 (-) False G291631
TU330676 lncRNA upstream 123338 69501096 ~ 69507947 (-) True G291631
XM_021597817.2 mRNA downstream 97301 69260503 ~ 69277276 (-) False LOC110520474
XR_002472988.2 mRNA downstream 787835 68584472 ~ 68586742 (-) True LOC110520471
XM_021597813.2 mRNA downstream 913998 68455461 ~ 68460579 (-) False LOC110520470
XM_021597811.2 mRNA downstream 1081827 68278572 ~ 68292750 (-) True LOC110520467
XM_021597810.2 mRNA downstream 1081828 68278572 ~ 68292749 (-) False LOC110520467
XM_036975027.1 mRNA upstream 2709 69380467 ~ 69469698 (-) True LOC110520476
XM_021597820.2 mRNA upstream 218079 69595837 ~ 69614655 (-) True LOC110520477
XM_021597827.2 mRNA upstream 263508 69641266 ~ 69644739 (-) False LOC110520480
XM_021597828.2 mRNA upstream 271779 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA upstream 274775 69652533 ~ 69675008 (-) True ankrd10b
TU330123 other downstream 118033 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 523723 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 649663 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 657192 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 726957 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 602588 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 729782 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 1342278 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1649861 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2525556 71903314 ~ 71903908 (-) True G293984

Expression Profile