RNA id: TU330820


Basic Information

Item Value
RNA id TU330820
length 764
lncRNA type antisense_over
GC content 0.47
exon number 2
gene id G291755
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69728233 ~ 69729053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGATTCTTGGGGACTTTTGGCCTGTTTTCCCCCTGTGGTCCTCTGTTTGGTACGGACTGCTGGTTTGGGTTTCTCCCTCGGGGGATCTTCAATCCCTTTCCTGCTGGGGGGAGCTGCTTTAAGTGGTACGCCTTGTGAGCCTTTCTTTTTCCCTTTTGCAGATTttatctcttcctcctcttcttcctgttcttcctcttcttcctctccctcctcatcttcttcctcctcctcttctccttctttactatctttctcttcctcctcatcttcttcctccacctcttctccttctttactatctttctcttcctctccctcctcatcttcttcctcctcctcttctccttctttactatctttctcttcctctccctcatcttcttcctcctcttcttctccttcctcttcatcttcttcctctcccgtttcctccacctccatctcccCTTTCTGTTCCCCTGCAGCTTCTTCTTCTAATTCACCATcaatttctttattttctttccatTCTTTTtcacctcccttctcctcccccctttttccaccctcctctccctctgtgtcttttCCACCTACTTCCTGTCTATCTTTttcttcttccttctcttcctcctcttgctTCTCCCTTTCCTCTTCTTGTTTGTTCGCTTCCTCCTCTCTCACTTCTATTTCCTCTTTCTCATCTTCCTGTTTTTcaccatcttcctcctcttccccttctccctcctccccttctcctttaTCATCTTCTTCTTCCccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330813 lncRNA downstream 11819 69714230 ~ 69716414 (-) True G291749
TU330812 lncRNA downstream 13376 69714230 ~ 69714857 (-) False G291749
TU330704 lncRNA downstream 83535 69641214 ~ 69644698 (-) True LOC110520480
TU330709 lncRNA downstream 87539 69639833 ~ 69640694 (-) True G291662
TU330697 lncRNA downstream 128524 69522755 ~ 69599709 (-) True G291652
TU330827 lncRNA upstream 4267 69733320 ~ 69733532 (-) True G291760
TU330830 lncRNA upstream 9456 69738509 ~ 69738762 (-) True G291763
TU330831 lncRNA upstream 12163 69741216 ~ 69741664 (-) True G291764
TU330833 lncRNA upstream 14791 69743844 ~ 69744143 (-) True G291766
TU330834 lncRNA upstream 15496 69744549 ~ 69744843 (-) True G291767
XM_036975032.1 mRNA downstream 19064 69698559 ~ 69709169 (-) True otc
XM_036975031.1 mRNA downstream 19107 69698465 ~ 69709126 (-) False otc
XM_021597828.2 mRNA downstream 53223 69649537 ~ 69675010 (-) False ankrd10b
XM_021597829.2 mRNA downstream 53225 69652533 ~ 69675008 (-) True ankrd10b
XM_021597827.2 mRNA downstream 83494 69641266 ~ 69644739 (-) False LOC110520480
XM_036975037.1 mRNA upstream 46579 69775632 ~ 69814808 (-) False sytl5
XM_036975036.1 mRNA upstream 46579 69775632 ~ 69860999 (-) False sytl5
XM_036975034.1 mRNA upstream 46579 69775632 ~ 69861000 (-) False sytl5
XM_036975035.1 mRNA upstream 46579 69775632 ~ 69861001 (-) True sytl5
XM_021597838.2 mRNA upstream 146869 69875922 ~ 69903855 (-) False xk
TU330123 other downstream 471689 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 877379 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1003319 68721808 ~ 68724914 (-) True G290602
TU329515 other downstream 1010848 68710367 ~ 68717385 (-) True G290598
TU329467 other downstream 1080613 68626332 ~ 68647620 (-) True G290567
TU330998 other upstream 251293 69980346 ~ 69996605 (-) True G291901
TU331092 other upstream 378487 70107540 ~ 70107950 (-) True G291977
TU332000 other upstream 990983 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 1298566 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 2174261 71903314 ~ 71903908 (-) True G293984

Expression Profile