RNA id: TU331354


Basic Information

Item Value
RNA id TU331354
length 322
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G292214
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70120408 ~ 70120729 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgctctctggttttgtgatggATCAAAcgtacaccaccgttcaaaagattggggtcactgagaaatgtccttgtctttgaaagaaaagctcatttttttgtccattaaaataataccaaattgattagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaacagcagattttttatggaatatctacataagtgtacagaggcccattatcagcaaccatcactcctgtgttccaacggtgcgttgtgttagctaatccaagtttatcatttttgtcacgactcctaccgaagatggctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330976 lncRNA downstream 85645 70030764 ~ 70034763 (-) False G291884
TU330977 lncRNA downstream 85645 70030764 ~ 70034763 (-) False G291884
TU330978 lncRNA downstream 85645 70030764 ~ 70034763 (-) False G291884
TU330979 lncRNA downstream 85645 70030764 ~ 70034763 (-) True G291884
TU330993 lncRNA downstream 148483 69971661 ~ 69971925 (-) True G291896
TU331351 lncRNA upstream 2130 70122859 ~ 70164009 (-) True G292211
TU331355 lncRNA upstream 7852 70128581 ~ 70129124 (-) True G292215
TU331398 lncRNA upstream 88838 70209567 ~ 70210180 (-) True G292252
TU331402 lncRNA upstream 94670 70215399 ~ 70215747 (-) True G292256
TU331428 lncRNA upstream 123140 70243869 ~ 70252589 (-) True G292272
XM_021597857.2 mRNA downstream 72015 70035040 ~ 70048393 (-) True LOC110520492
XM_021597856.2 mRNA downstream 72025 70035040 ~ 70048383 (-) False LOC110520492
XM_021597858.2 mRNA downstream 72025 70035040 ~ 70048383 (-) False LOC110520492
XM_021597853.2 mRNA downstream 149235 69949665 ~ 69971173 (-) True LOC110520490
XM_021597849.2 mRNA downstream 149236 69949665 ~ 69971172 (-) False LOC110520490
XM_036975048.1 mRNA upstream 4569 70125298 ~ 70135532 (-) True LOC110520496
LOC118964359 mRNA upstream 99601 70220330 ~ 70220464 (-) True LOC118964359
XM_021597886.2 mRNA upstream 650427 70771156 ~ 70806536 (-) False LOC110520510
XM_036975066.1 mRNA upstream 650427 70771156 ~ 70806539 (-) False LOC110520510
XM_036975067.1 mRNA upstream 650427 70771156 ~ 70806540 (-) True LOC110520510
TU331092 other downstream 12458 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 123803 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 863864 69256005 ~ 69256544 (-) True G291138
TU329646 other downstream 1269554 68846611 ~ 68850854 (-) True G290713
TU329520 other downstream 1395494 68721808 ~ 68724914 (-) True G290602
TU332000 other upstream 599307 70720036 ~ 70720591 (-) True G292753
TU332200 other upstream 906890 71027619 ~ 71040152 (-) True G292919
TU333405 other upstream 1782585 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 2052320 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 2450520 72571249 ~ 72575432 (-) True G294451

Expression Profile