RNA id: TU332339


Basic Information

Item Value
RNA id TU332339
length 804
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G293042
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71162738 ~ 71172116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaggagaatgaggttgtGATACACCAAACAGAAAGGAGAATGTAGGTGTTGATATCCGAAACAGAGATGAGAatggggtggtgatataccaaaccgaaagaggagaatgaggtggtgatataccaaacagaagGAGTAGAAGGAGGAGGTGATATaccaaatagagagaggagaatgaggtggtgatataccaaacagagagatgagaatgaggtggtgatataccaaacagagaggggaggatgaggtGTTGATATACCAAatagagaggagaatgaggttgtGATACACCAAACAGAAAGGAGAATGTAGGTGTTGATATcctaaacagagaggagaatggggtggtgatataccaaacaaaAGGAGTAGAaggaggtggtgatataccaaatagagagaggagaataaGGTGGTGaaataccaaacagagagagaagaatgaggtgttaatataccaaacagagaagagaatgaggtggtgatataccaaacagagagaggagaatgaggtgttaatataccaaacagagaagagaatgaggtggtgatataccaaacagagagaggagaatgaggtggtgatataccgAACAGAAGGAGTAGAAGGAGATGGTGATATaccaaatagagagaggagaatgaggtggtgaaataccaaacagagagaggagaatgaggtgttaatataccaaacagagaagagaatgaggtggtgatataccaaacagaaagaggagaatgaggtggttatataccaaacagagagaggagaatgaggtggtgatataccaaacagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332212 lncRNA downstream 118857 71043640 ~ 71043881 (-) True G292931
TU332208 lncRNA downstream 121039 71041160 ~ 71041699 (-) True G292927
TU332146 lncRNA downstream 212950 70949397 ~ 70949788 (-) False G292869
TU332147 lncRNA downstream 212950 70949397 ~ 70949788 (-) False G292869
TU332148 lncRNA downstream 212950 70949397 ~ 70949788 (-) True G292869
TU332363 lncRNA upstream 16917 71189033 ~ 71189369 (-) True G293064
TU332428 lncRNA upstream 58020 71230136 ~ 71230661 (-) True G293127
TU332429 lncRNA upstream 58688 71230804 ~ 71231379 (-) True G293128
TU332823 lncRNA upstream 108467 71280583 ~ 71280916 (-) True G293486
TU332830 lncRNA upstream 128407 71300523 ~ 71301326 (-) True G293493
XM_036975071.1 mRNA downstream 153019 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 153035 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 212139 70945034 ~ 70950599 (-) True tmem30c
XR_005051368.1 mRNA downstream 255164 70896509 ~ 70907574 (-) True LOC118964322
XM_021597890.2 mRNA downstream 325247 70810604 ~ 70837491 (-) True LOC110520512
XR_005051369.1 mRNA upstream 500343 71672459 ~ 71676171 (-) True LOC118964323
XM_036975076.1 mRNA upstream 536366 71708482 ~ 71716359 (-) False LOC110520517
XM_036965166.1 mRNA upstream 582163 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 601914 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 601914 71774030 ~ 71785012 (-) False rnaseh2b
TU332200 other downstream 122586 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 442147 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1054788 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1166133 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 1906194 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 731198 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 1000933 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1399133 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1603291 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1704223 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile