RNA id: TU332830


Basic Information

Item Value
RNA id TU332830
length 804
lncRNA type intronic
GC content 0.42
exon number 1
gene id G293493
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71300523 ~ 71301326 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttacctaatacctatATTTTACTTTAAaaatgcactgttggttagggcttgtaagtaagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctcttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctcttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctcttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtatcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctcttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcactgtgaggtctacacctgttgtattcagcatttcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU332823 lncRNA downstream 19607 71280583 ~ 71280916 (-) True G293486
TU332429 lncRNA downstream 69144 71230804 ~ 71231379 (-) True G293128
TU332428 lncRNA downstream 69862 71230136 ~ 71230661 (-) True G293127
TU332363 lncRNA downstream 111154 71189033 ~ 71189369 (-) True G293064
TU332341 lncRNA downstream 125524 71170686 ~ 71174999 (-) True G293043
TU332832 lncRNA upstream 1748 71303074 ~ 71303688 (-) True G293495
TU332839 lncRNA upstream 19169 71320495 ~ 71320723 (-) True G293502
TU332849 lncRNA upstream 47507 71348833 ~ 71349318 (-) True G293511
TU332852 lncRNA upstream 54998 71356324 ~ 71356834 (-) True G293514
TU332857 lncRNA upstream 59843 71361169 ~ 71361400 (-) True G293518
XM_036975071.1 mRNA downstream 290804 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 290820 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 349924 70945034 ~ 70950599 (-) True tmem30c
XR_005051368.1 mRNA downstream 392949 70896509 ~ 70907574 (-) True LOC118964322
XM_021597890.2 mRNA downstream 463032 70810604 ~ 70837491 (-) True LOC110520512
XR_005051369.1 mRNA upstream 371133 71672459 ~ 71676171 (-) True LOC118964323
XM_036975076.1 mRNA upstream 407156 71708482 ~ 71716359 (-) False LOC110520517
XM_036965166.1 mRNA upstream 452953 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 472704 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 472704 71774030 ~ 71785012 (-) False rnaseh2b
TU332200 other downstream 260371 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 579932 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1192573 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1303918 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2043979 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 601988 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 871723 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 1269923 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1474081 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1575013 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile