RNA id: TU333106


Basic Information

Item Value
RNA id TU333106
length 506
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G293731
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71739534 ~ 71740039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGTAggctacatattatacattacgTGTGAAACATTATGTGAGGATTAAATATAGATTCAATCAATgagatgtggggggagattctccatatagtcaataaaaggttgccaaattctgtaaaatgtctttaacttattcctcaagcagtaagtgattttctccaaagggatacaactattaacttccgatagccacattgcaactggcagggaggaatccaatttccatttcaaggcaatacatttcttggcattcgctagcaatatttctgttagctttatagtatggctttgcctaagattggtgttagtaaagttacccagtagacagacctccgggtctaaagggaatgcaaccccgtgaattgaggatatggtatcgcataccccctgccagaaaccgtgtagttttgaacactgccaagtggaatggaggaatgttccttcatctgagccacatctaaaacatagggaggagatatctgggttgaacttgtgcagtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU333104 lncRNA downstream 948 71738279 ~ 71738586 (-) True G293729
TU333095 lncRNA downstream 7738 71731579 ~ 71731796 (-) True G293725
TU333074 lncRNA downstream 23868 71708940 ~ 71715666 (-) False LOC110520517
TU333076 lncRNA downstream 23868 71708940 ~ 71715666 (-) True LOC110520517
TU333056 lncRNA downstream 70197 71669109 ~ 71669337 (-) True G293691
TU333113 lncRNA upstream 11351 71751390 ~ 71751794 (-) True G293738
TU333114 lncRNA upstream 11873 71751912 ~ 71752323 (-) True G293739
TU333122 lncRNA upstream 45411 71785450 ~ 71785848 (-) True G293747
TU333130 lncRNA upstream 61930 71801969 ~ 71802295 (-) True G293755
TU333197 lncRNA upstream 117224 71857263 ~ 71857466 (-) True G293818
XM_036975076.1 mRNA downstream 23175 71708482 ~ 71716359 (-) False LOC110520517
XR_005051369.1 mRNA downstream 63363 71672459 ~ 71676171 (-) True LOC118964323
XM_036975071.1 mRNA downstream 729815 70950681 ~ 71009719 (-) True cmss1
XM_021597894.2 mRNA downstream 729831 70950681 ~ 71009703 (-) False cmss1
XM_036975070.1 mRNA downstream 788935 70945034 ~ 70950599 (-) True tmem30c
XM_036965166.1 mRNA upstream 14240 71754279 ~ 71764744 (-) True LOC110504652
XM_036975077.1 mRNA upstream 33991 71774030 ~ 71784997 (-) False rnaseh2b
XM_021597898.2 mRNA upstream 33991 71774030 ~ 71785012 (-) False rnaseh2b
XM_021597899.2 mRNA upstream 33991 71774030 ~ 71785013 (-) True rnaseh2b
XM_021597901.2 mRNA upstream 192382 71932421 ~ 71935177 (-) False trim13
TU332200 other downstream 699382 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1018943 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 1631584 70107540 ~ 70107950 (-) True G291977
TU330998 other downstream 1742929 69980346 ~ 69996605 (-) True G291901
TU330123 other downstream 2482990 69256005 ~ 69256544 (-) True G291138
TU333405 other upstream 163275 71903314 ~ 71903908 (-) True G293984
TU333434 other upstream 433010 72173049 ~ 72206798 (-) True LOC110504660
TU333986 other upstream 831210 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 1035368 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 1136300 72876339 ~ 72880854 (-) True LOC110520539

Expression Profile