RNA id: TU333881



Basic Information


Item Value
RNA id TU333881
length 204
lncRNA type intronic
GC content 0.35
exon number 1
gene id G294380
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 72536047 ~ 72536250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGATGTTTTGGTATTTTTTTTCGTACATCAGCACCCAATGCTGTCAATTATATCACAGAGACTTTGACAATAATGATTAGGGTTGAACGATCGGATGCTAAATCTGTGGTTTGAGgacaattatttttatttaacctttatttaaccagccaactcagttaagaacaaattcttaattacaatgacggcctacttgtaaagcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU333878 lncRNA downstream 4789 72531003 ~ 72531258 (-) True G294377
TU333875 lncRNA downstream 9747 72525995 ~ 72526300 (-) True G294374
TU333862 lncRNA downstream 35357 72490872 ~ 72500690 (-) True LOC110520531
TU333860 lncRNA downstream 45363 72488680 ~ 72490684 (-) True G294361
TU333868 lncRNA downstream 49377 72486162 ~ 72486670 (-) True G294367
TU333886 lncRNA upstream 4318 72540568 ~ 72540801 (-) True G294385
TU334012 lncRNA upstream 73662 72609912 ~ 72611224 (-) True G294470
TU334016 lncRNA upstream 75716 72611966 ~ 72612375 (-) True G294472
TU334021 lncRNA upstream 86927 72623177 ~ 72623637 (-) True G294477
TU334036 lncRNA upstream 106992 72643242 ~ 72645495 (-) False G294491
XM_036975090.1 mRNA downstream 269397 72264378 ~ 72266650 (-) True LOC110520529
XM_036975087.1 mRNA downstream 329229 72121974 ~ 72206818 (-) False LOC110504660
LOC110504707 mRNA upstream 240466 72776716 ~ 72782874 (-) True LOC110504707
XM_036975102.1 mRNA upstream 255054 72791304 ~ 72825267 (-) False LOC110504714
XM_036975103.1 mRNA upstream 255054 72791304 ~ 72826819 (-) False LOC110504714
XM_036975101.1 mRNA upstream 255054 72791304 ~ 72834464 (-) False LOC110504714
XM_036975105.1 mRNA upstream 255054 72791304 ~ 72834464 (-) False LOC110504714
TU333434 other downstream 329249 72173049 ~ 72206798 (-) True LOC110504660
TU333405 other downstream 632139 71903314 ~ 71903908 (-) True G293984
TU332200 other downstream 1495895 71027619 ~ 71040152 (-) True G292919
TU332000 other downstream 1815456 70720036 ~ 70720591 (-) True G292753
TU331092 other downstream 2428097 70107540 ~ 70107950 (-) True G291977
TU333986 other upstream 34999 72571249 ~ 72575432 (-) True G294451
TU334284 other upstream 239157 72775407 ~ 72776607 (-) True G294697
TU334351 other upstream 340089 72876339 ~ 72880854 (-) True LOC110520539
TU335813 other upstream 1036042 73572292 ~ 73572911 (-) True G296011
TU335855 other upstream 1095788 73632038 ~ 73633036 (-) False G296043

Expression Profile