RNA id: TU335848



Basic Information


Item Value
RNA id TU335848
length 303
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G296042
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73631659 ~ 73631961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atatttaatataacacacatacattaattaTTCATTTCGGTTGCCTATCCTGACATGAAGTTTGTTCTATAGGTAGAATTTAACTCTGATGTGTGCCACATAAAGTGTTTGACTCTActgacaaaattaaggaaattagaaggggggGATTTAGGCAAGGCCATTTTCTTGCCTGCTGAaattctctcccccccttctAATGTCCATAATTTTATcactagagtcaaatactttttttcccttacatttttgcctaaaatgacatacccaaatctaactgcctgtagctcaggacctgaagca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU335845 lncRNA downstream 3276 73628039 ~ 73628383 (-) True G296039
TU335814 lncRNA downstream 57736 73573650 ~ 73573923 (-) True G296012
TU335812 lncRNA downstream 59885 73571251 ~ 73571774 (-) True G296010
TU335771 lncRNA downstream 153103 73476854 ~ 73478556 (-) True G295979
TU335652 lncRNA downstream 413847 73216943 ~ 73217812 (-) True G295865
TU335865 lncRNA upstream 27547 73659508 ~ 73660094 (-) True G296052
TU335704 lncRNA upstream 30261 73662222 ~ 73667390 (-) True LOC110520558
TU335868 lncRNA upstream 55697 73687658 ~ 73688154 (-) True G296055
TU335871 lncRNA upstream 65752 73697713 ~ 73699561 (-) True G296057
TU335883 lncRNA upstream 84344 73716305 ~ 73716793 (-) True G296068
XM_036975120.1 mRNA downstream 17129 73597442 ~ 73614530 (-) True LOC110520555
XM_036975122.1 mRNA downstream 17130 73597442 ~ 73614529 (-) False LOC110520555
XM_036975121.1 mRNA downstream 17242 73597442 ~ 73614417 (-) False LOC110520555
XM_036975118.1 mRNA downstream 17853 73597442 ~ 73613806 (-) False LOC110520555
XM_036975119.1 mRNA downstream 17885 73597442 ~ 73613774 (-) False LOC110520555
XM_036975124.1 mRNA upstream 10559 73642520 ~ 73651632 (-) True LOC110520557
XM_036975132.1 mRNA upstream 30035 73661996 ~ 73682161 (-) False LOC110520558
XM_036975148.1 mRNA upstream 30035 73661996 ~ 73682830 (-) False LOC110520558
XM_036975146.1 mRNA upstream 30035 73661996 ~ 73682833 (-) False LOC110520558
XM_036975134.1 mRNA upstream 30035 73661996 ~ 73682839 (-) False LOC110520558
TU335813 other downstream 58748 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 750805 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 855052 72775407 ~ 72776607 (-) True G294697
TU333986 other downstream 1056227 72571249 ~ 72575432 (-) True G294451
TU333434 other downstream 1424861 72173049 ~ 72206798 (-) True LOC110504660
TU335855 other upstream 77 73632038 ~ 73633036 (-) False G296043
TU335849 other upstream 343 73632304 ~ 73633036 (-) True G296043
TU335926 other upstream 141193 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 141193 73773154 ~ 73775299 (-) True G296102
TU335922 other upstream 176521 73808482 ~ 73809596 (-) True G296100

Expression Profile