RNA id: TU335865


Basic Information

Item Value
RNA id TU335865
length 419
lncRNA type intronic
GC content 0.43
exon number 4
gene id G296052
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73659508 ~ 73660094 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatgacaaaacatttatttttactgctctaattacattggtaaccagtttataataacaataaggcacctcaggggtttgtggtatatggccaatataccacggctaagggctgtatccaagcactctgcgttgcgtcgtgtttaagaacagcccttagcctgtTGTAAATTGGCCGTATGCCACACCCCGTCGTGCCTTATTGCTGAAATaaacacagtcagtagaacaggTGCAAGGATACTGAACTAGTAGAACAGGTGCATGGATACTGAACTAGTAGAACAGGTGCATGGATACTGAACTAGTAGAACAGGTGCATGGATACTGAACTAGTAGAACAGGTGCATGGATACTGAACTAGTAGAACAGGTGCATGGATACTGAACTAGTAGAACAGGTGCATGGATACTGAACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU335848 lncRNA downstream 27547 73631659 ~ 73631961 (-) True G296042
TU335845 lncRNA downstream 31125 73628039 ~ 73628383 (-) True G296039
TU335814 lncRNA downstream 85585 73573650 ~ 73573923 (-) True G296012
TU335812 lncRNA downstream 87734 73571251 ~ 73571774 (-) True G296010
TU335771 lncRNA downstream 180952 73476854 ~ 73478556 (-) True G295979
TU335704 lncRNA upstream 2128 73662222 ~ 73667390 (-) True LOC110520558
TU335868 lncRNA upstream 27564 73687658 ~ 73688154 (-) True G296055
TU335871 lncRNA upstream 37619 73697713 ~ 73699561 (-) True G296057
TU335883 lncRNA upstream 56211 73716305 ~ 73716793 (-) True G296068
TU335884 lncRNA upstream 57078 73717172 ~ 73717461 (-) True G296069
XM_036975124.1 mRNA downstream 7876 73642520 ~ 73651632 (-) True LOC110520557
XM_036975120.1 mRNA downstream 44978 73597442 ~ 73614530 (-) True LOC110520555
XM_036975122.1 mRNA downstream 44979 73597442 ~ 73614529 (-) False LOC110520555
XM_036975121.1 mRNA downstream 45091 73597442 ~ 73614417 (-) False LOC110520555
XM_036975118.1 mRNA downstream 45702 73597442 ~ 73613806 (-) False LOC110520555
XM_036975132.1 mRNA upstream 1902 73661996 ~ 73682161 (-) False LOC110520558
XM_036975148.1 mRNA upstream 1902 73661996 ~ 73682830 (-) False LOC110520558
XM_036975146.1 mRNA upstream 1902 73661996 ~ 73682833 (-) False LOC110520558
XM_036975134.1 mRNA upstream 1902 73661996 ~ 73682839 (-) False LOC110520558
XM_036975140.1 mRNA upstream 1902 73661996 ~ 73697336 (-) False LOC110520558
TU335855 other downstream 26472 73632038 ~ 73633036 (-) False G296043
TU335849 other downstream 26472 73632304 ~ 73633036 (-) True G296043
TU335813 other downstream 86597 73572292 ~ 73572911 (-) True G296011
TU334351 other downstream 778654 72876339 ~ 72880854 (-) True LOC110520539
TU334284 other downstream 882901 72775407 ~ 72776607 (-) True G294697
TU335926 other upstream 113060 73773154 ~ 73775299 (-) False G296102
TU335928 other upstream 113060 73773154 ~ 73775299 (-) True G296102
TU335922 other upstream 148388 73808482 ~ 73809596 (-) True G296100
TU336010 other upstream 212879 73872973 ~ 73873817 (-) True LOC110520572
TU336013 other upstream 217625 73877719 ~ 73880371 (-) True G296166

Expression Profile