RNA id: TU336073



Basic Information


Item Value
RNA id TU336073
length 321
lncRNA type intronic
GC content 0.37
exon number 2
gene id G296213
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74009319 ~ 74009676 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctcaTTTCGaaaaaatattgctgttacattgcacaaccttcaatgttatgtcataattatgtaaaattctagcaaattaattacggtctttgttaggaataaaagGCCTTTCAACAGTTCGCAACGAGGCTAAACTGCTGCATCTACCCTGGCTCTGATTTCACTGAACGCAACAGAagtgacataacattgaaggttgtgcaatgtaacaggaatattttgacttagggatgccacccgttcgataaaatacggaacggttccgcatttcactgaaagaataaatgtttagTTTTCGAAATTagagtttccagatttgac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU336066 lncRNA downstream 25941 73983102 ~ 73983378 (-) True G296206
TU336060 lncRNA downstream 31371 73977611 ~ 73977948 (-) True G296203
TU336001 lncRNA downstream 44447 73963300 ~ 73964872 (-) False LOC110520576
TU335996 lncRNA downstream 50332 73957970 ~ 73958987 (-) True G296151
TU335993 lncRNA downstream 53272 73954904 ~ 73956047 (-) True G296148
TU336133 lncRNA upstream 101280 74110956 ~ 74113300 (-) True G296267
TU336162 lncRNA upstream 156886 74166562 ~ 74167156 (-) True G296295
TU336163 lncRNA upstream 159204 74168880 ~ 74169105 (-) True G296296
TU336166 lncRNA upstream 161100 74170776 ~ 74171073 (-) True G296299
TU336176 lncRNA upstream 215920 74225596 ~ 74225992 (-) True G296309
XR_005051412.1 mRNA downstream 31768 73977380 ~ 73977551 (-) True LOC118964361
LOC118964353 mRNA downstream 34880 73974330 ~ 73974439 (-) True LOC118964353
XR_005051411.1 mRNA downstream 35704 73973452 ~ 73973615 (-) True LOC118964355
XR_005051379.1 mRNA downstream 35918 73960416 ~ 73973401 (-) False LOC110520576
XM_021597965.2 mRNA upstream 94844 74104520 ~ 74107240 (-) True LOC100136284
XM_036975206.1 mRNA upstream 155842 74165518 ~ 74246111 (-) False LOC110504742
XM_036975194.1 mRNA upstream 155842 74165518 ~ 74438683 (-) False LOC110504742
XM_036975195.1 mRNA upstream 155842 74165518 ~ 74438683 (-) False LOC110504742
XM_036975196.1 mRNA upstream 155842 74165518 ~ 74438683 (-) False LOC110504742
TU336000 other downstream 37489 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 128948 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 135502 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 199723 73808482 ~ 73809596 (-) True G296100
TU335928 other downstream 234020 73773154 ~ 73775299 (-) True G296102
TU336182 other upstream 229511 74239187 ~ 74239795 (-) True G296315
TU338161 other upstream 1950871 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 2045445 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 2156327 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 2773167 76782843 ~ 76787731 (-) True G299024

Expression Profile